Search result

BaseInfo

ncRNA ID zma-miR167c-3p
Species Zea mays
Class miRNA
Genome position chr5:4303816-4303947 [+]
Reference genome RefGen_v2
Source miRBase
Length 23
Mature sequence(if miRNA) 92 - GAUCAUGCUGUGGCAGCCUCACU - 114
Stem-loop(if miRNA) U      ----     C      A       --            UC  A        -G    GAGA
 GCCCAA    GGGAA GAGUGA GCUGCCA  GCAUGAUCUAGC  GG GUGAUCAC  CGAG    A
 ||||||    ||||| |||||| |||||||  ||||||||||||  || ||||||||  ||||    C
 CGGGUU    CCCUU UUCACU CGACGGU  CGUACUAGAUCG  CC UACUGGUG  GCUC    A
A      CCUG     C      C       GU            UU  G        GA    GAUA
Stem-loop sequence UGCCCAAGGGAACGAGUGAAGCUGCCAGCAUGAUCUAGCUCGGAGUGAUCACGCGAGGAGAACAAUAGCUCGAGGUGGUCAUGCCUUGCUAGAUCAUGCUGUGGCAGCCUCACUUCUUCCCGUCCUUGGGCA

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).