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BaseInfo

ncRNA ID	zma-miR167c-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:4303816-4303947 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	17 - UGAAGCUGCCAGCAUGAUCUA - 37
Stem-loop(if miRNA)	U      ----     C      A       --            UC  A        -G    GAGA  GCCCAA    GGGAA GAGUGA GCUGCCA  GCAUGAUCUAGC  GG GUGAUCAC  CGAG    A  ||||||    ||||| |||||| |||||||  ||||||||||||  || ||||||||  ||||    C  CGGGUU    CCCUU UUCACU CGACGGU  CGUACUAGAUCG  CC UACUGGUG  GCUC    A A      CCUG     C      C       GU            UU  G        GA    GAUA
Stem-loop sequence	UGCCCAAGGGAACGAGUGAAGCUGCCAGCAUGAUCUAGCUCGGAGUGAUCACGCGAGGAGAACAAUAGCUCGAGGUGGUCAUGCCUUGCUAGAUCAUGCUGUGGCAGCCUCACUUCUUCCCGUCCUUGGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235254.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1249 from Patent EP2985353	NA	coding protein	psRNATarget
JB163890.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1554 from Patent EP2559767	NA	coding protein	psRNATarget
JB163585.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1249 from Patent EP2559767	NA	coding protein	psRNATarget
HI403429.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1554 from Patent EP2074227	NA	coding protein	psRNATarget
HI403124.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1249 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235559.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:69   CAGAUCAUGCUGGCAGCUUCA   89 Target Full Sequence	0.0	Sequence 1554 from Patent EP2985353	NA	coding protein	psRNATarget
HI403057.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1182 from Patent EP2074227	NA	coding protein	psRNATarget
JB163802.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1466 from Patent EP2559767	NA	coding protein	psRNATarget
HI403341.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1466 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235187.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1182 from Patent EP2985353	NA	coding protein	psRNATarget
JB163518.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1182 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235471.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:80   CAGAUCAUGCUGGCAGCUUCA   100 Target Full Sequence	0.0	Sequence 1466 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235115.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:93   CAGAUCAUGCUGGCAGCUUCA   113 Target Full Sequence	0.0	Sequence 1110 from Patent EP2985353	NA	coding protein	psRNATarget
JB163446.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:93   CAGAUCAUGCUGGCAGCUUCA   113 Target Full Sequence	0.0	Sequence 1110 from Patent EP2559767	NA	coding protein	psRNATarget
HI402985.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:93   CAGAUCAUGCUGGCAGCUUCA   113 Target Full Sequence	0.0	Sequence 1110 from Patent EP2074227	NA	coding protein	psRNATarget
BT062276.2	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|||||||||||||||||||| targets:997   CAGAUCAUGCUGGCAGCUUCA   1017 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0274F14 mRNA, complete cds	NA	coding protein	psRNATarget
BT055864.1	ncRNA:21   AUCUAGUACGACCGUCGAAGU   1   *|*||||||*||||||||||| targets:646   AAUAUCAUGAUGGCAGCUUCA   666 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348E11 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).