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BaseInfo

ncRNA ID	zma-miR390b-3p
Species	Zea mays
Class	miRNA
Genome position	chr5:2763821-2764012 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	171 - CGCUAUCUAUCCUGAGCUCCA - 191
Stem-loop(if miRNA)	-- A         G         CUA   ------A    C C      U      AC  A  -   --A       U A                        G AGCUCAGGA GGAUAGCGC   GGA       AUCA A AUAGAU GGAGCC  GA GA GGA   GGGAGAA G GAGAGAGAGAGACAGAGCAGCU   | ||||||||| |||||||||   |||       |||| | |||||| ||||||  || || |||   ||||||| | |||||||||||||||||||||A   C UCGAGUCCU UCUAUCGCG   CCU       UAGU U UAUCUG UCUUGG  CU CU CCU   UUCUCUU C CUCUCUCUCUCUGUCUCGUCGU CA C         A         AAG   AGCUAAG    A A      -      AA  -  A   AGG       U A
Stem-loop sequence	GAAGCUCAGGAGGGAUAGCGCCUAGGAAAUCACACAUAGAUUGGAGCCACGAAGAGGAAGGGAGAAUGAGAGAGAGAGAGACAGAGCAGCUAUGCUGCUCUGUCUCUCUCUCUCACUUUCUCUUGGAUCCAUCUCAAGGUUCUGUCUAUAUAUGAUGAAUCGAUCCGAAGCGCUAUCUAUCCUGAGCUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235120.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2985353	NA	coding protein	psRNATarget
HI402990.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2074227	NA	coding protein	psRNATarget
JB163451.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235402.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2985353	NA	coding protein	psRNATarget
HI403272.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2074227	NA	coding protein	psRNATarget
JB163733.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   ||||||||||||||||||||| targets:9   UGGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2559767	NA	coding protein	psRNATarget
AY111410.1	ncRNA:21   ACCUCGAGUCCUAUCUAUCGC   1   **||*=||||||||||||||* targets:617   ACGAUUUCAGGAUAGAUAGCU   637 Target Full Sequence	3.0	Zea mays CL56074_1 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).