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BaseInfo

ncRNA ID zma-miR171a-5p
Species Zea mays
Class miRNA
Genome position chr4:234515128-234515226 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 3 - UAUUGGCGAGGUUCAAUCAGA - 23
Stem-loop(if miRNA)           A             ----G   --   UUUUCUUAUAUAUA
GAUAUUGGCG GGUUCAAUCAGAU     AUG  UAU              A
|||||||||| |||||||||||||     |||  |||              A
CUAUAACCGC CCGAGUUAGUCUG     UAA  GUG              U
          G             UGACC   GU   GAAGUACGUACGUU
Stem-loop sequence GAUAUUGGCGAGGUUCAAUCAGAUGAUGUAUUUUUCUUAUAUAUAAAUUUGCAUGCAUGAAGGUGUGAAUCCAGUGUCUGAUUGAGCCGCGCCAAUAUC

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).