Search result

BaseInfo

ncRNA ID	zma-miR399g-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:228643117-228643184 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	47 - UGCCAAAGGGGAUUUGCCCGG - 67
Stem-loop(if miRNA)	--A      CC    G        ----UGCG   G    GGGCAA  CCCC UUGGCAGG        ACG C    ||||||  |||| ||||||||        |||    CCCGUU  GGGG AACCGUCC        UGC G CGG      UA    A        CAUCCCCA   A
Stem-loop sequence	AGGGCAACCCCCCGUUGGCAGGUGCGACGGCGACGUACCCCUACCCUGCCAAAGGGGAUUUGCCCGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KT345709.1	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   |=|||||||||=||||||||| targets:432   CUGGGCAAAUCUCCUUUGGCA   452 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   |=|||||||||=||||||||| targets:514   CUGGGCAAAUCUCCUUUGGCA   534 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   =||||||||||=||||||||| targets:565   UCGGGCAAAUCUCCUUUGGCA   585 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   **|||||||||=||||||||| targets:474   GGGGGCAAAUCUCCUUUGGCA   494 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   =*|||||||||=||||||||| targets:255   UAGGGCAAAUCUCCUUUGGCA   275 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   |=|||||||||=||||||||| targets:1336   CUGGGCAAAUCUCCUUUGGCA   1356 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   |=|||||||||=||||||||| targets:1418   CUGGGCAAAUCUCCUUUGGCA   1438 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   =||||||||||=||||||||| targets:1469   UCGGGCAAAUCUCCUUUGGCA   1489 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   **|||||||||=||||||||| targets:1378   GGGGGCAAAUCUCCUUUGGCA   1398 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GGCCCGUUUAGGGGAAACCGU   1   =*|||||||||=||||||||| targets:1159   UAGGGCAAAUCUCCUUUGGCA   1179 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).