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BaseInfo

ncRNA ID	zma-miR396e-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:173300108-173300273 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - GGUCAAGAAAGCCGUGGGAAG - 22
Stem-loop(if miRNA)	--       A          A       --------------------UUCUUCUCUCUC     AG  CCGUAUAGCUUCUUUGAACCUCUCU   UUUCCAC GCUUUCUUGA CUUCUUC                                UUAGA  GG                         C   ||||||| |||||||||| |||||||                                |||||  ||   AAGGGUG CGAAAGAACU GAAGAAG                                UUUCA  CA                         U AG       C          G       CCUCUAGUCUCUCGCUCUCCGUCUCUUACUUC     --  AGCACAUGUGAAAACUCUCUCUCUC
Stem-loop sequence	UUUCCACAGCUUUCUUGAACUUCUUCUUCUUCUCUCUCUUAGAAGGGCCGUAUAGCUUCUUUGAACCUCUCUCUCUCUCUCUCUCAAAAGUGUACACGAACACUUUCUUCAUUCUCUGCCUCUCGCUCUCUGAUCUCCGAAGAAGGUCAAGAAAGCCGUGGGAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403326.1	ncRNA:21   GAAGGGUGCCGAAAGAACUGG   1   ||||||||||||||||||||| targets:13   CUUCCCACGGCUUUCUUGACC   33 Target Full Sequence	0.0	Sequence 1451 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235456.1	ncRNA:21   GAAGGGUGCCGAAAGAACUGG   1   ||||||||||||||||||||| targets:13   CUUCCCACGGCUUUCUUGACC   33 Target Full Sequence	0.0	Sequence 1451 from Patent EP2985353	NA	coding protein	psRNATarget
JB163787.1	ncRNA:21   GAAGGGUGCCGAAAGAACUGG   1   ||||||||||||||||||||| targets:13   CUUCCCACGGCUUUCUUGACC   33 Target Full Sequence	0.0	Sequence 1451 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235524.1	ncRNA:21   GAAGGGUGCCGAAAGAACUGG   1   ||||||||*|||||||||||| targets:13   CUUCCCACAGCUUUCUUGACC   33 Target Full Sequence	1.5	Sequence 1519 from Patent EP2985353	NA	coding protein	psRNATarget
HI403394.1	ncRNA:21   GAAGGGUGCCGAAAGAACUGG   1   ||||||||*|||||||||||| targets:13   CUUCCCACAGCUUUCUUGACC   33 Target Full Sequence	1.5	Sequence 1519 from Patent EP2074227	NA	coding protein	psRNATarget
JB163855.1	ncRNA:21   GAAGGGUGCCGAAAGAACUGG   1   ||||||||*|||||||||||| targets:13   CUUCCCACAGCUUUCUUGACC   33 Target Full Sequence	1.5	Sequence 1519 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).