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BaseInfo

ncRNA ID	zma-miR396a-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:173295127-173295263 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	100 - GUUCAAUAAAGCUGUGGGAAA - 120
Stem-loop(if miRNA)	ACA     -   C    C  C            C      U    -G    --- GGCUGGUGGAUGCUGC    UGGCC CUC UUGC GU UUCCACAGCUUU UUGAAC GCAU  CCGC   C                G    ||||| ||| |||| || |||||||||||| |||||| ||||  ||||   |    ACCGG GAG GACG CA AGGGUGUCGAAA AACUUG CGCG  GAAC   A                C --C     A   A    U  A            U      A    GA    CCU GCUGGCCUUAAGUUCG
Stem-loop sequence	ACAUGGCCCUCCUUGCCGUCUUCCACAGCUUUCUUGAACUGCAUGCCGCCGGCUGGUGGAUGCUGCGCGCUUGAAUUCCGGUCGAUCCCAAGAGGCGCAGUUCAAUAAAGCUGUGGGAAACUGCAGAGAGAGGCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235577.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:9   UUUCCCACAGCUUUAUUGAAC   29 Target Full Sequence	0.0	Sequence 1572 from Patent EP2985353	NA	coding protein	psRNATarget
HI403137.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:9   UUUCCCACAGCUUUAUUGAAC   29 Target Full Sequence	0.0	Sequence 1262 from Patent EP2074227	NA	coding protein	psRNATarget
JB163598.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:9   UUUCCCACAGCUUUAUUGAAC   29 Target Full Sequence	0.0	Sequence 1262 from Patent EP2559767	NA	coding protein	psRNATarget
JB163908.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:9   UUUCCCACAGCUUUAUUGAAC   29 Target Full Sequence	0.0	Sequence 1572 from Patent EP2559767	NA	coding protein	psRNATarget
HI403447.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:9   UUUCCCACAGCUUUAUUGAAC   29 Target Full Sequence	0.0	Sequence 1572 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235267.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:9   UUUCCCACAGCUUUAUUGAAC   29 Target Full Sequence	0.0	Sequence 1262 from Patent EP2985353	NA	coding protein	psRNATarget
HI405913.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:11   UUUCCCACAGCUUUAUUGAAC   31 Target Full Sequence	0.0	Sequence 4038 from Patent EP2074227	NA	coding protein	psRNATarget
JB166374.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:11   UUUCCCACAGCUUUAUUGAAC   31 Target Full Sequence	0.0	Sequence 4038 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238043.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   ||||||||||||||||||||| targets:11   UUUCCCACAGCUUUAUUGAAC   31 Target Full Sequence	0.0	Sequence 4038 from Patent EP2985353	NA	coding protein	psRNATarget
EU941272.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:190   UCUUCCACAGCUUUCUUGAAC   210 Target Full Sequence	2.5	Zea mays clone 1438995 mRNA sequence	NA	coding protein	psRNATarget
HI405909.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:11   UCUUCCACAGCUUUCUUGAAC   31 Target Full Sequence	2.5	Sequence 4034 from Patent EP2074227	NA	coding protein	psRNATarget
JB166370.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:11   UCUUCCACAGCUUUCUUGAAC   31 Target Full Sequence	2.5	Sequence 4034 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238039.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:11   UCUUCCACAGCUUUCUUGAAC   31 Target Full Sequence	2.5	Sequence 4034 from Patent EP2985353	NA	coding protein	psRNATarget
HI405912.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:11   UCUUCCACAGCUUUCUUGAAC   31 Target Full Sequence	2.5	Sequence 4037 from Patent EP2074227	NA	coding protein	psRNATarget
JB166373.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:11   UCUUCCACAGCUUUCUUGAAC   31 Target Full Sequence	2.5	Sequence 4037 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238042.1	ncRNA:21   AAAGGGUGUCGAAAUAACUUG   1   |*|=||||||||||*|||||| targets:11   UCUUCCACAGCUUUCUUGAAC   31 Target Full Sequence	2.5	Sequence 4037 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).