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BaseInfo

ncRNA ID	zma-miR172c-5p
Species	Zea mays
Class	miRNA
Genome position	chr4:171126410-171126532 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	4 - CAGCACCACCAAGAUUCACA - 23
Stem-loop(if miRNA)	C  C        A    -  ACUC    ---     UUCAGUGAUGCAUGCAUGCU GUGCAGCA CA CAAGAUUC CAUC CA    UCAC   GCAUC                    C |||||||| || |||||||| |||| ||    ||||   |||||                    U UACGUCGU GU GUUCUAAG GUAG GU    AGUG   ACGUA                    G         A  A        A    A  ----    UAU     UAUCGACGACGCUCUGUAGU
Stem-loop sequence	GUGCAGCACCACCAAGAUUCACAUCCAACUCUCACGCAUCUUCAGUGAUGCAUGCAUGCUCUGUGAUGUCUCGCAGCAGCUAUAUGCAUAUGUGAUGAGAUGAGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY107555.1	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:620   GGUGCAUCAUGGUGGUGCUG   639 Target Full Sequence	2.5	Zea mays PCO090816 mRNA sequence	NA	coding protein	psRNATarget
XM_020545112.1	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:634   GGUGCAUCAUGGUGGUGCUG   653 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100285431 (pco090816a), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008663831.2	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:1757   GGUGCAUCAUGGUGGUGCUG   1776 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100285431 (pco090816a), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008663830.2	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:1756   GGUGCAUCAUGGUGGUGCUG   1775 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100285431 (pco090816a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545111.1	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:1575   GGUGCAUCAUGGUGGUGCUG   1594 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100285431 (pco090816a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001158324.1	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:1698   GGUGCAUCAUGGUGGUGCUG   1717 Target Full Sequence	2.5	Zea mays uncharacterized LOC100285431 (pco090816a), mRNA	NA	coding protein	psRNATarget
EU972222.1	ncRNA:20   ACACUUAGAACCACCACGAC   1   *|||*|||*||||||||||| targets:1698   GGUGCAUCAUGGUGGUGCUG   1717 Target Full Sequence	2.5	Zea mays clone 377926 sterol 3-beta-glucosyltransferase mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).