Search result

BaseInfo

ncRNA ID	zma-miR399b-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:154715956-154716077 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - UGCCAAAGGAGAGCUGUCCUG - 40
Stem-loop(if miRNA)	GUAGCU      --GC    CA   UG          C     U --       U    GA GC       CAGGGU    GAAU  CAG  CAGCUCUCCU UGGCA G  AAGGCUG GAGA  G  A       ||||||    ||||  |||  |||||||||| ||||| |  ||||||| ||||  |       GUCCCG    CUUA  GUC  GUCGAGAGGA ACCGU C  UUCCGGU CUUU  C  U ---AAC      AUUA    CC   CU          A     C CG       -    AA AG
Stem-loop sequence	GUAGCUCAGGGUGCGAAUCACAGUGCAGCUCUCCUCUGGCAUGAAGGCUGUGAGAGAGGCAUGACAAUUUCUGGCCUUGCCCUGCCAAAGGAGAGCUGUCCUGCCAUUCAUUAGCCCUGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949059.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=|||||||||||||||| targets:71   CAGGGCAGCUCUCCUUUGGCA   91 Target Full Sequence	1.0	Zea mays clone 394906 mRNA sequence	NA	coding protein	psRNATarget
JB163901.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=||*||||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	2.0	Sequence 1565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235570.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=||*||||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	2.0	Sequence 1565 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235262.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=||*||||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	2.0	Sequence 1257 from Patent EP2985353	NA	coding protein	psRNATarget
HI403132.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=||*||||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	2.0	Sequence 1257 from Patent EP2074227	NA	coding protein	psRNATarget
HI403440.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=||*||||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	2.0	Sequence 1565 from Patent EP2074227	NA	coding protein	psRNATarget
JB163593.1	ncRNA:21   GUCCUGUCGAGAGGAAACCGU   1   ||||=||*||||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	2.0	Sequence 1257 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).