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BaseInfo

ncRNA ID	zma-miR156a-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:83887632-83887783 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	22
Mature sequence(if miRNA)	18 - GCUCACUUCUCUCUCUGUCAGU - 39
Stem-loop(if miRNA)	U    UCC UG    ----         -     -        A      G   A        ---A   -  C   AU     UCGU   G  GCUA    ACUGACAGA AGAGA GUGAGCAC CAGCGG CAG CUGCAUCG    UCG AU UGC  CCGA  ||||   |  ||||    ||||||||| ||||| |||||||| |||||| ||| ||||||||    ||| || |||  |||G  GGCA   C  CGAU    UGACUGUCU UCUCU CACUCGUG GUCGUC GUC GACGUAGU    AGC UG ACG  GGCA C    --U GU    CUCC         C     U        C      -   -        AGUA   A  C   -C
Stem-loop sequence	UUCGUUCCGUGGCUAACUGACAGAAGAGAGUGAGCACACAGCGGGCAGACUGCAUCGAUCGAUCUGCAUCCGAGACGGCGCACGUACGAAUGAUGAUGCAGCUGCUGCUGCGUGCUCACUUCUCUCUCUGUCAGUCCUCUAGCUGCUACGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169044.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   =||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240713.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   =||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2985353	NA	coding protein	psRNATarget
HI408583.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   =||||||||*|||||||||||| targets:8   GCUGACAGAAAGAGAAGUGAGC   29 Target Full Sequence	1.5	Sequence 6708 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539323.1	ncRNA:22   UGACUGUCUCUCUCUUCACUCG   1   |**||*||||=||||||||||| targets:191   AGAGAGAGAGGGAGAAGUGAGC   212 Target Full Sequence	2.5	PREDICTED: Zea mays auxin response factor 17 (LOC103629639), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).