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BaseInfo

ncRNA ID	zma-miR169d
Species	Zea mays
Class	miRNA
Genome position	chr4:47454177-47454304 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	88 - UAGCCAAGGAGACUGCCUAUG - 108
Stem-loop(if miRNA)	GC          --A   A  C          -    -       A    CUC  UGGUCCACACAUU   AAUAGGGGCC   CUC GG UAGCCAAGGA GACU GCCUAUG ACCU   AA             C   ||||||||||   ||| || |||||||||| |||| ||||||| ||||   ||   UUAUUCCCGG   GAG CU AUCGGUUCCU CUGA CGGAUAC GGAA   AC             A --          AUG   A  -          A    A       A    ---  AAAUGUUUCCUGG
Stem-loop sequence	GCAAUAGGGGCCACUCAGGCUAGCCAAGGAGACUGCCUAUGAACCUCUCAAUGGUCCACACAUUCAGGUCCUUUGUAAACAAAGGACAUAGGCAAGUCAUCCUUGGCUAUCAGAGGUAGGCCCUUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410178.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ||*|||||||||||||||||| targets:107   CACAGGCAGUCUCCUUGGCUA   127 Target Full Sequence	1.0	Sequence 8303 from Patent EP2074227	NA	coding protein	psRNATarget
JB170639.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ||*|||||||||||||||||| targets:107   CACAGGCAGUCUCCUUGGCUA   127 Target Full Sequence	1.0	Sequence 8303 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242308.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ||*|||||||||||||||||| targets:107   CACAGGCAGUCUCCUUGGCUA   127 Target Full Sequence	1.0	Sequence 8303 from Patent EP2985353	NA	coding protein	psRNATarget
BT061088.2	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ||*|||||||||||||||||| targets:448   CACAGGCAGUCUCCUUGGCUA   468 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0099C08 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235564.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ==|=|||=||||||||||||| targets:90   UGUGGGCGGUCUCCUUGGCUA   110 Target Full Sequence	2.0	Sequence 1559 from Patent EP2985353	NA	coding protein	psRNATarget
JB163895.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ==|=|||=||||||||||||| targets:90   UGUGGGCGGUCUCCUUGGCUA   110 Target Full Sequence	2.0	Sequence 1559 from Patent EP2559767	NA	coding protein	psRNATarget
HI403434.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   ==|=|||=||||||||||||| targets:90   UGUGGGCGGUCUCCUUGGCUA   110 Target Full Sequence	2.0	Sequence 1559 from Patent EP2074227	NA	coding protein	psRNATarget
EU968670.1	ncRNA:21   GUAUCCGUCAGAGGAACCGAU   1   |=*|||||||||||||||||| targets:195   CGCAGGCAGUCUCCUUGGCUA   215 Target Full Sequence	1.0	Zea mays clone 323259 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).