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BaseInfo

ncRNA ID zma-miR169i-3p
Species Zea mays
Class miRNA
Genome position chr4:47241963-47242153 [+]
Reference genome RefGen_v2
Source miRBase
Length 18
Mature sequence(if miRNA) 155 - GGCAGUCUCCUUGGCUAG - 172
Stem-loop(if miRNA) - A        GU  C  -U   -         U    U       U CU     -  CU C     U  -AA GAC    -  GU     C   -  AG G
 G UGAGAGUG  AG UC  GGU AGCCAAGGA GACU GCCUGUG G  GGCCA CG  C CCUCA GC   G   CAUC UC  GUCGA CGA CG  C A
 | ||||||||  || ||  ||| ||||||||| |||| ||||||| |  ||||| ||  | ||||| ||   |   |||| ||  ||||| ||| ||  |
 C AUUCUCAC  UC AG  CCG UCGGUUCCU CUGA CGGGCAC C  CUGGU GC  G GGGGU CG   C   GUAG AG  UAGCU GCU GC  G G
G C        --  -  UC   A         -    -       U -U     U  AU U     U  AAG --A    G  AG     A   A  GA C
Stem-loop sequence GAUGAGAGUGGUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGUGCUGGCCACGCUCCCCUCAUGCAAGGACCAUCUCGUGUCGACCGACGAGCGAGCGAGCGAUCGAUCGAUGAGAGGAUGACGAAGCUUGGGGUGUACGUUGGUCUCUCACGGGCAGUCUCCUUGGCUAGCCCUGACUCACUCUUACCG

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).