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BaseInfo

ncRNA ID zma-miR2275b-3p
Species Zea mays
Class miRNA
Genome position chr4:30201689-30201770 [+]
Reference genome RefGen_v2
Source miRBase
Length 22
Mature sequence(if miRNA) 51 - UUCAGUUUCCUCUAAUAUCUCA - 72
Stem-loop(if miRNA)     C   AG     -        C         --AU  U
CCAU UGA  UGAGG AUUAGAGG AACUGAACC    CA C
|||| |||  ||||| |||||||| |||||||||    || U
GGUA GCU  ACUCU UAAUCUCC UUGACUUGG    GU A
    A   CU     A        U         AAAC  U
Stem-loop sequence CCAUCUGAAGUGAGGAUUAGAGGCAACUGAACCAUCAUCUAUUGCAAAGGUUCAGUUUCCUCUAAUAUCUCAUCUCGAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU966034.1
ncRNA:22   ACUCUAUAAUCUCCUUUGACUU   1
  ||=|*||||||||||||||*||
targets:157   UGGGCUAUUAGAGGAAACUCAA   178

2.5 Zea mays clone 291049 mRNA sequence NA coding protein psRNATarget

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).