Search result

BaseInfo

ncRNA ID zma-miR2275b-5p
Species Zea mays
Class miRNA
Genome position chr4:30201689-30201770 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 13 - AGGAUUAGAGGCAACUGAACC - 33
Stem-loop(if miRNA)     C   AG     -        C         --AU  U
CCAU UGA  UGAGG AUUAGAGG AACUGAACC    CA C
|||| |||  ||||| |||||||| |||||||||    || U
GGUA GCU  ACUCU UAAUCUCC UUGACUUGG    GU A
    A   CU     A        U         AAAC  U
Stem-loop sequence CCAUCUGAAGUGAGGAUUAGAGGCAACUGAACCAUCAUCUAUUGCAAAGGUUCAGUUUCCUCUAAUAUCUCAUCUCGAAUGG

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).