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BaseInfo

ncRNA ID	zma-miR2275a-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:30201533-30201654 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	22
Mature sequence(if miRNA)	81 - UUUGUUUUCCUCCAAUAUCUCA - 102
Stem-loop(if miRNA)	-----      A      -                        --     GGA   AG GUCAGGC     ACUGAA GUGAGA GUUGGAGGAAAGCAAACCGGCUGG  GUAUC   UUC  C |||||||     |||||| |||||| ||||||||||||||||||||||||  |||||   ||| UAGUCUG     UGACUU CACUCU UAACCUCCUUUUGUUUGGCUGGCC  CGUGG   AGG  A        AUAGC      C      A                        GU     --G   CA
Stem-loop sequence	GUCAGGCACUGAAAGUGAGAGUUGGAGGAAAGCAAACCGGCUGGGUAUCGGAUUCAGCAACGGAGGGUGCUGCCGGUCGGUUUGUUUUCCUCCAAUAUCUCACCUUCAGUCGAUAGUCUGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001151324.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   ||||||||||||||||*||||| targets:63   UGAGAUAUUGGAGGAACACAAA   84 Target Full Sequence	1.5	Zea mays uncharacterized LOC100277868 (LOC100277868), mRNA	NA	coding protein	psRNATarget
EU970899.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   ||||||||||||||||*||||| targets:63   UGAGAUAUUGGAGGAACACAAA   84 Target Full Sequence	1.5	Zea mays clone 353638 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962523.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   ||||||=|||||||||*||||| targets:27   UGAGAUGUUGGAGGAACACAAA   48 Target Full Sequence	2.5	Zea mays clone 243439 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU969220.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   ||||||=|||||||||*||||| targets:26   UGAGAUGUUGGAGGAACACAAA   47 Target Full Sequence	2.5	Zea mays clone 326963 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU969179.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   ||||||=|||||||||*||||| targets:26   UGAGAUGUUGGAGGAACACAAA   47 Target Full Sequence	2.5	Zea mays clone 326639 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU950405.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   |*|||||||*|||||||||||| targets:62   UAAGAUAUUAGAGGAAAACAAA   83 Target Full Sequence	1.5	Zea mays clone 490782 mRNA sequence	NA	coding protein	psRNATarget
EU945603.1	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   ||||||*||||||*|||||||| targets:60   UGAGAUUUUGGAGAAAAACAAA   81 Target Full Sequence	2.5	Zea mays clone 279097 mRNA sequence	NA	coding protein	psRNATarget
XM_008651674.2	ncRNA:22   ACUCUAUAACCUCCUUUUGUUU   1   *|||=*|||||||||||||||= targets:4666   AGAGGCAUUGGAGGAAAACAAG   4687 Target Full Sequence	3.0	PREDICTED: Zea mays cingulin (LOC103630626), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009).