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BaseInfo

ncRNA ID zma-miR2275a-5p
Species Zea mays
Class miRNA
Genome position chr4:30201533-30201654 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 18 - AGAGUUGGAGGAAAGCAAACC - 38
Stem-loop(if miRNA)        -----      A      -                        --     GGA   AG
GUCAGGC     ACUGAA GUGAGA GUUGGAGGAAAGCAAACCGGCUGG  GUAUC   UUC  C
|||||||     |||||| |||||| ||||||||||||||||||||||||  |||||   |||
UAGUCUG     UGACUU CACUCU UAACCUCCUUUUGUUUGGCUGGCC  CGUGG   AGG  A
       AUAGC      C      A                        GU     --G   CA
Stem-loop sequence GUCAGGCACUGAAAGUGAGAGUUGGAGGAAAGCAAACCGGCUGGGUAUCGGAUUCAGCAACGGAGGGUGCUGCCGGUCGGUUUGUUUUCCUCCAAUAUCUCACCUUCAGUCGAUAGUCUGAU

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).