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BaseInfo

ncRNA ID	zma-miR159g-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:25719885-25720136 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	231 - UUUGGAGUGAAGGGAGUUCUG - 251
Stem-loop(if miRNA)	AGUUUGAUUCACU    - U    CC   GACUAGACGGUCUGGUCUUAAGGCGGUGCUCCCUUCACACCAAUAAACGGUCGAUCUGAUGGGUGGUACAGCUGCUCGUUCAUGGUUCCCACUGUCCCAUCUCA              AGAC C GAUC  CUA                                                                                                        U              |||| | ||||  |||                                                                                                        C              CGUC U GAGG  GAA                                                                                                        A -------------    U -    --   GUGAGGUUUGUCGCCAGUUGCUUCCCCUGCUCCGUCGAGGAGCCAGUACGUUUGGUGUUCGGGUAGAGUUCGUAGAGAGCGAGAGAGUACUAGAAGAGAGAGAG
Stem-loop sequence	AGUUUGAUUCACUAGACCUGAUCCCCUAGACUAGACGGUCUGGUCUUAAGGCGGUGCUCCCUUCACACCAAUAAACGGUCGAUCUGAUGGGUGGUACAGCUGCUCGUUCAUGGUUCCCACUGUCCCAUCUCAUCAGAGAGAGAGAAGAUCAUGAGAGAGCGAGAGAUGCUUGAGAUGGGCUUGUGGUUUGCAUGACCGAGGAGCUGCCUCGUCCCCUUCGUUGACCGCUGUUUGGAGUGAAGGGAGUUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HQ858750.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:977   UGGAGCUCCCUUCACUCCAAG   997 Target Full Sequence	2.0	Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT063828.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:1102   UGGAGCUCCCUUCACUCCAAG   1122 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds	NA	coding protein	psRNATarget
EU970886.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:1195   UGGAGCUCCCUUCACUCCAAG   1215 Target Full Sequence	2.0	Zea mays clone 353123 transcription factor GAMYB mRNA, complete cds	NA	coding protein	psRNATarget
BT062692.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:1241   UGGAGCUCCCUUCACUCCAAG   1261 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137160.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:1268   UGGAGCUCCCUUCACUCCAAG   1288 Target Full Sequence	2.0	Zea mays MYBGA transcription factor (LOC100191731), mRNA	NA	coding protein	psRNATarget
BT033925.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:1268   UGGAGCUCCCUUCACUCCAAG   1288 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673816.2	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   ==||=|||||||||||||||= targets:1370   UGGAGCUCCCUUCACUCCAAG   1390 Target Full Sequence	2.0	PREDICTED: Zea mays MYBGA transcription factor (LOC100191731), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545934.1	ncRNA:21   GUCUUGAGGGAAGUGAGGUUU   1   =||*|*||||||||||||||| targets:2078   UAGUAAUCCCUUCACUCCAAA   2098 Target Full Sequence	2.0	PREDICTED: Zea mays protein DENND6B (LOC103633980), transcript variant X3, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).