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BaseInfo

ncRNA ID	zma-miR169o-3p
Species	Zea mays
Class	miRNA
Genome position	chr4:12909537-12909674 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	117 - GGCAGGUCUUCUUGGCUAGC - 136
Stem-loop(if miRNA)	---G          U        U  G    CCCUCUGUUGGCAGUUCCGUCCGGCAGCCAUGGCGACGGU     UAGCCAAGAA GACUUGCC AU CACG                                        U     |||||||||| |||||||| || ||||     AUCGGUUCUU CUGGACGG CU ACGU                                        G ACCG          -        -  -    CGGUGUAACGUAGUAGGUGCGGCGUUUUUGAGUGGAACAC
Stem-loop sequence	GUAGCCAAGAAUGACUUGCCUAUGCACGCCCUCUGUUGGCAGUUCCGUCCGGCAGCCAUGGCGACGGUUGCACAAGGUGAGUUUUUGCGGCGUGGAUGAUGCAAUGUGGCUGCAUCGGCAGGUCUUCUUGGCUAGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405806.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   |||||||||||||||||||| targets:9   GCUAGCCAAGAAGACCUGCC   28 Target Full Sequence	0.0	Sequence 3931 from Patent EP2074227	NA	coding protein	psRNATarget
JB166267.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   |||||||||||||||||||| targets:9   GCUAGCCAAGAAGACCUGCC   28 Target Full Sequence	0.0	Sequence 3931 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237936.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   |||||||||||||||||||| targets:9   GCUAGCCAAGAAGACCUGCC   28 Target Full Sequence	0.0	Sequence 3931 from Patent EP2985353	NA	coding protein	psRNATarget
EZ099543.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:66   UCUAGCCAAGAAGACAUGCC   85 Target Full Sequence	1.5	TSA: Zea mays contig35198, mRNA sequence	NA	coding protein	psRNATarget
BT017871.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:804   UCUAGCCAAGAAGACAUGCC   823 Target Full Sequence	1.5	Zea mays clone EL01N0512G03.c mRNA sequence	NA	coding protein	psRNATarget
BT018473.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:1262   UCUAGCCAAGAAGACAUGCC   1281 Target Full Sequence	1.5	Zea mays clone EL01N0423C05.d mRNA sequence	NA	coding protein	psRNATarget
EU968601.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:1293   UCUAGCCAAGAAGACAUGCC   1312 Target Full Sequence	1.5	Zea mays clone 322716 alpha-taxilin mRNA, complete cds	NA	coding protein	psRNATarget
BT036502.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:1475   UCUAGCCAAGAAGACAUGCC   1494 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0119F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139120.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:1475   UCUAGCCAAGAAGACAUGCC   1494 Target Full Sequence	1.5	Zea mays alpha-taxilin (LOC100194064), mRNA	NA	coding protein	psRNATarget
BT054773.1	ncRNA:20   CGAUCGGUUCUUCUGGACGG   1   *||||||||||||||*|||| targets:1824   UCUAGCCAAGAAGACAUGCC   1843 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0036G22 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).