Search result

BaseInfo

ncRNA ID zma-miR169o-5p
Species Zea mays
Class miRNA
Genome position chr4:12909537-12909674 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 2 - UAGCCAAGAAUGACUUGCCUA - 22
Stem-loop(if miRNA) ---G          U        U  G    CCCUCUGUUGGCAGUUCCGUCCGGCAGCCAUGGCGACGGU
    UAGCCAAGAA GACUUGCC AU CACG                                        U
    |||||||||| |||||||| || ||||
    AUCGGUUCUU CUGGACGG CU ACGU                                        G
ACCG          -        -  -    CGGUGUAACGUAGUAGGUGCGGCGUUUUUGAGUGGAACAC
Stem-loop sequence GUAGCCAAGAAUGACUUGCCUAUGCACGCCCUCUGUUGGCAGUUCCGUCCGGCAGCCAUGGCGACGGUUGCACAAGGUGAGUUUUUGCGGCGUGGAUGAUGCAAUGUGGCUGCAUCGGCAGGUCUUCUUGGCUAGCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ237936.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||||||||||||||||
targets:123   UAGGCAAGUCAUUCUUGGCUA   143

0.0 Sequence 3931 from Patent EP2985353 NA coding protein psRNATarget
JB166267.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||||||||||||||||
targets:123   UAGGCAAGUCAUUCUUGGCUA   143

0.0 Sequence 3931 from Patent EP2559767 NA coding protein psRNATarget
HI405806.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||||||||||||||||
targets:123   UAGGCAAGUCAUUCUUGGCUA   143

0.0 Sequence 3931 from Patent EP2074227 NA coding protein psRNATarget
JB166435.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  ||||||||*||||||||||||
targets:91   UAGGCAAGCCAUUCUUGGCUA   111

1.5 Sequence 4099 from Patent EP2559767 NA coding protein psRNATarget
LQ238104.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  ||||||||*||||||||||||
targets:91   UAGGCAAGCCAUUCUUGGCUA   111

1.5 Sequence 4099 from Patent EP2985353 NA coding protein psRNATarget
HI405974.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  ||||||||*||||||||||||
targets:91   UAGGCAAGCCAUUCUUGGCUA   111

1.5 Sequence 4099 from Patent EP2074227 NA coding protein psRNATarget
BT062831.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  ||||||||||||*||||||||
targets:304   UAGGCAAGUCAUCCUUGGCUA   324

1.5 Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds NA coding protein psRNATarget
BT068645.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  ||||||||||||*||||||||
targets:932   UAGGCAAGUCAUCCUUGGCUA   952

1.5 Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds NA coding protein psRNATarget
NM_001176546.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  ||||||||||||*||||||||
targets:932   UAGGCAAGUCAUCCUUGGCUA   952

1.5 Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA NA coding protein psRNATarget
AY111961.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:347   UAGGCAAAUCAUUCUUGGCUG   367

2.0 Zea mays CL834_3 mRNA sequence NA coding protein psRNATarget
AY110209.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:852   UAGGCAAAUCAUUCUUGGCUG   872

2.0 Zea mays CL834_-1 mRNA sequence NA coding protein psRNATarget
KM655750.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1089   UAGGCAAAUCAUUCUUGGCUG   1109

2.0 Zea mays NF-YA11 mRNA, complete cds NA coding protein psRNATarget
BT069933.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1315   UAGGCAAAUCAUUCUUGGCUG   1335

2.0 Zea mays full-length cDNA clone ZM_BFb0328N11 mRNA, complete cds NA coding protein psRNATarget
BT038299.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1235   UAGGCAAAUCAUUCUUGGCUG   1255

2.0 Zea mays full-length cDNA clone ZM_BFb0224M21 mRNA, complete cds NA coding protein psRNATarget
XM_020552141.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1315   UAGGCAAAUCAUUCUUGGCUG   1335

2.0 PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X4, mRNA NA coding protein psRNATarget
BT036977.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1319   UAGGCAAAUCAUUCUUGGCUG   1339

2.0 Zea mays full-length cDNA clone ZM_BFb0150B05 mRNA, complete cds NA coding protein psRNATarget
BT041906.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1360   UAGGCAAAUCAUUCUUGGCUG   1380

2.0 Zea mays full-length cDNA clone ZM_BFb0078A16 mRNA, complete cds NA coding protein psRNATarget
NM_001156465.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1367   UAGGCAAAUCAUUCUUGGCUG   1387

2.0 Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), mRNA NA coding protein psRNATarget
EU965152.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1367   UAGGCAAAUCAUUCUUGGCUG   1387

2.0 Zea mays clone 284127 nuclear transcription factor Y subunit A-10 mRNA, complete cds NA coding protein psRNATarget
BT041872.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1088   UAGGCAAAUCAUUCUUGGCUG   1108

2.0 Zea mays full-length cDNA clone ZM_BFb0070O11 mRNA, complete cds NA coding protein psRNATarget
XM_008679358.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1386   UAGGCAAAUCAUUCUUGGCUG   1406

2.0 PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X2, mRNA NA coding protein psRNATarget
BT033811.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1320   UAGGCAAAUCAUUCUUGGCUG   1340

2.0 Zea mays full-length cDNA clone ZM_BFc0155E11 mRNA, complete cds NA coding protein psRNATarget
BT067827.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1338   UAGGCAAAUCAUUCUUGGCUG   1358

2.0 Zea mays full-length cDNA clone ZM_BFc0168D11 mRNA, complete cds NA coding protein psRNATarget
XM_008679362.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1494   UAGGCAAAUCAUUCUUGGCUG   1514

2.0 PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X3, mRNA NA coding protein psRNATarget
BT035257.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1515   UAGGCAAAUCAUUCUUGGCUG   1535

2.0 Zea mays full-length cDNA clone ZM_BFb0051L17 mRNA, complete cds NA coding protein psRNATarget
NM_001138257.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1515   UAGGCAAAUCAUUCUUGGCUG   1535

2.0 Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), mRNA NA coding protein psRNATarget
EU953786.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1391   UAGGCAAAUCAUUCUUGGCUG   1411

2.0 Zea mays clone 1446017 nuclear transcription factor Y subunit A-2 mRNA, complete cds NA coding protein psRNATarget
NM_001137081.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1391   UAGGCAAAUCAUUCUUGGCUG   1411

2.0 Zea mays uncharacterized LOC100191652 (LOC100191652), mRNA NA coding protein psRNATarget
XM_008679356.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1557   UAGGCAAAUCAUUCUUGGCUG   1577

2.0 PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X1, mRNA NA coding protein psRNATarget
EU957863.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1377   UAGGCAAAUCAUUCUUGGCUG   1397

2.0 Zea mays clone 1627559 nuclear transcription factor Y subunit A-10 mRNA, complete cds NA coding protein psRNATarget
XM_020553053.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1394   UAGGCAAAUCAUUCUUGGCUG   1414

2.0 PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X5, mRNA NA coding protein psRNATarget
EU956682.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1640   UAGGCAAAUCAUUCUUGGCUG   1660

2.0 Zea mays clone 1570561 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020549421.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1361   UAGGCAAAUCAUUCUUGGCUG   1381

2.0 PREDICTED: Zea mays uncharacterized LOC100191652 (LOC100191652), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008682879.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1432   UAGGCAAAUCAUUCUUGGCUG   1452

2.0 PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682880.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1457   UAGGCAAAUCAUUCUUGGCUG   1477

2.0 PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008682882.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1462   UAGGCAAAUCAUUCUUGGCUG   1482

2.0 PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008682881.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1494   UAGGCAAAUCAUUCUUGGCUG   1514

2.0 PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X3, mRNA NA coding protein psRNATarget
BT064690.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1815   UAGGCAAAUCAUUCUUGGCUG   1835

2.0 Zea mays full-length cDNA clone ZM_BFb0034D08 mRNA, complete cds NA coding protein psRNATarget
XM_020549389.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1649   UAGGCAAAUCAUUCUUGGCUG   1669

2.0 PREDICTED: Zea mays uncharacterized LOC100191652 (LOC100191652), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549405.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  |||||||*||||||||||||=
targets:1652   UAGGCAAAUCAUUCUUGGCUG   1672

2.0 PREDICTED: Zea mays uncharacterized LOC100191652 (LOC100191652), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001152615.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *|||||||||||*||||||||
targets:545   CAGGCAAGUCAUCCUUGGCUA   565

1.5 Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA NA coding protein psRNATarget
BT054579.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *|||||||||||*||||||||
targets:545   CAGGCAAGUCAUCCUUGGCUA   565

1.5 Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds NA coding protein psRNATarget
EU964905.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *||||||*||||||||||||*
targets:1048   CAGGCAAUUCAUUCUUGGCUU   1068

2.0 Zea mays clone 282466 mRNA sequence NA coding protein psRNATarget
EU962076.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *||||||*||||||||||||*
targets:1253   CAGGCAAUUCAUUCUUGGCUU   1273

2.0 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds NA coding protein psRNATarget
XM_008678498.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *||||||*||||||||||||*
targets:1294   CAGGCAAUUCAUUCUUGGCUU   1314

2.0 PREDICTED: Zea mays NF-YA6 (uaz7c01g06), transcript variant X2, mRNA NA coding protein psRNATarget
BT063803.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *||||||*||||||||||||*
targets:1296   CAGGCAAUUCAUUCUUGGCUU   1316

2.0 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds NA coding protein psRNATarget
NM_001155626.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *||||||*||||||||||||*
targets:1296   CAGGCAAUUCAUUCUUGGCUU   1316

2.0 Zea mays NF-YA6 (uaz7c01g06), mRNA NA coding protein psRNATarget
XM_020551674.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  *||||||*||||||||||||*
targets:1848   CAGGCAAUUCAUUCUUGGCUU   1868

2.0 PREDICTED: Zea mays NF-YA6 (uaz7c01g06), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548143.1
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  **||||||||||*|||||||=
targets:767   CCGGCAAGUCAUCCUUGGCUG   787

2.5 PREDICTED: Zea mays uncharacterized LOC103648407 (LOC103648407), mRNA NA coding protein psRNATarget
BT060668.2
ncRNA:21   AUCCGUUCAGUAAGAACCGAU   1
  **||||||||||*|||||||=
targets:1023   CCGGCAAGUCAUCCUUGGCUG   1043

2.5 Zea mays full-length cDNA clone ZM_BFb0031E01 mRNA, complete cds NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
© 2017 OPP-ncRBASE. All rights reserved.