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BaseInfo

ncRNA ID	zma-miR169n-3p
Species	Zea mays
Class	miRNA
Genome position	chr3:229987641-229987744 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	84 - GGCAGGCCUUCUUGGCUAAG - 103
Stem-loop(if miRNA)	--           U        U   -     --U  UUG UU    - UG  AG   UUAGCCAAGAA GGCUUGCC AUC UCCAC   GU   G  CGUC U  GG  A   ||||||||||| |||||||| ||| |||||   ||   |  |||| |  ||  C   AAUCGGUUCUU CCGGACGG UAG AGGUG   CA   U  GUAG A  CC  C CG           -        -   U     UGU  -UG GG    U GU  CA
Stem-loop sequence	UUAGCCAAGAAUGGCUUGCCUAUCUCCACUGUUUGGUUCGUCUUGGGAGACCACCCUGAUGAUGGGUGUACUGUGUGGAUGAUGGCAGGCCUUCUUGGCUAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166435.1	ncRNA:20   GAAUCGGUUCUUCCGGACGG   1   |||||||||||||||||||| targets:10   CUUAGCCAAGAAGGCCUGCC   29 Target Full Sequence	0.0	Sequence 4099 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238104.1	ncRNA:20   GAAUCGGUUCUUCCGGACGG   1   |||||||||||||||||||| targets:10   CUUAGCCAAGAAGGCCUGCC   29 Target Full Sequence	0.0	Sequence 4099 from Patent EP2985353	NA	coding protein	psRNATarget
HI405974.1	ncRNA:20   GAAUCGGUUCUUCCGGACGG   1   |||||||||||||||||||| targets:10   CUUAGCCAAGAAGGCCUGCC   29 Target Full Sequence	0.0	Sequence 4099 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546066.1	ncRNA:20   GAAUCGGUUCUUCCGGACGG   1   |**|||*||||||||||||| targets:1559   CGCAGCGAAGAAGGCCUGCC   1578 Target Full Sequence	3.0	PREDICTED: Zea mays probable apyrase 3 (LOC103640688), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546065.1	ncRNA:20   GAAUCGGUUCUUCCGGACGG   1   |**|||*||||||||||||| targets:1689   CGCAGCGAAGAAGGCCUGCC   1708 Target Full Sequence	3.0	PREDICTED: Zea mays probable apyrase 3 (LOC103640688), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).