A ncRNA database for oil producing plants

Search result

ncRNA ID	ath-miRf10297-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - GUCACUCGACCUGGGGGUCGAGUGA - NA
Stem-loop(if miRNA)	G A GG G G GGGUGG G A GAU A GUUACUCGACCU GGGUCGAGUGAU U AUC U GUC G \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \| \|\|\| CUA U UAGUGAGCUGGG UCCAGCUCACUG A UAG G UAG A G G GG A G -----A G A
Stem-loop sequence	GAUGAAGUUACUCGACCUGGGGGUCGAGUGAUGUGAUCGGGUGGUGGUCAGAAGAUGGAGAUGAAGUCACUCGACCUGGGGGUCGAGUGAUGUGAUC

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

BT015478.1

ncRNA:25	AGUGAGCUGGGGGUCCAGCUCACUG	1
	*=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:136	AUACUCGACCCCCAGGUCGAGUGAC	160

0.0

Arabidopsis thaliana At4g05636 mRNA sequence

coding protein

BT014714.1

ncRNA:25	AGUGAGCUGGGGGUCCAGCUCACUG	1
	*=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:136	AUACUCGACCCCCAGGUCGAGUGAC	160

0.0

Arabidopsis thaliana At4g05636.1 mRNA sequence

coding protein

BT025674.1

ncRNA:25	AG-UGAGCUGGGGGUCCAGCUCACUG	1
	\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|
targets:186	UCUACUCGACCCCCAGGUCGAGUAAC	211

1.5

Arabidopsis thaliana

coding protein