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BaseInfo

ncRNA ID	zma-miR399d-5p
Species	Zea mays
Class	miRNA
Genome position	chr3:189204037-189204161 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	18 - GUGUGGCUCUCCUCUGGCAUG - 38
Stem-loop(if miRNA)	--U  A   --GA    CA   U UG        C      GAA    C  CU AG    AC   C    CA GGU    GAAU  CAG G  GCUCUCCU UGGCAU   GGCG GG  G  AGGC  GAA A    || |||    ||||  ||| |  |||||||| ||||||   |||| ||  |  ||||  |||    GU CCG    CUUA  GUC C  CGAGAGGA ACCGUA   CCGU CC  C  UCCG  CUU G AAC  C   AUUG    CC   C GU        A      --A    -  -- CU    GU   U
Stem-loop sequence	UCAAGGUGAGAAUCACAGUGUGGCUCUCCUCUGGCAUGAAGGCGCGGCUGAGAGGCACGAACAGUUUCUGGCCUUCCCCUGCCAAUGCCAAAGGAGAGCUGCCCUGCCAUUCGUUAGCCCUGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949059.1	ncRNA:21   GUACGGUCUCCUCUCGGUGUG   1   ||||||||||||||||||||| targets:139   CAUGCCAGAGGAGAGCCACAC   159 Target Full Sequence	0.0	Zea mays clone 394906 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).