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BaseInfo

ncRNA ID	zma-miR397a-5p
Species	Zea mays
Class	miRNA
Genome position	chr3:180667115-180667257 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	122 - UCAUUGAGCGCAGCGUUGAUG - 142
Stem-loop(if miRNA)	-  CAU       -    UUG     G --------GGA     UACGUCUUCCCGGGCUUCACUUUCAGCUUGA  GU   UGAGCGC AGCG   AUGAU C           GCAUG                               A  ||   ||||||| ||||   ||||| |           |||||                               C  CA   ACUCGCG UUGC   UACUA G           AGUAU                               G U  AUU       A    CGA     A AAAUAUGAUUG     AGGUAUGAAUACUAUACGUACGUGCGUCUGU
Stem-loop sequence	GUCAUUGAGCGCAGCGUUGAUGAUGCGGAGCAUGUACGUCUUCCCGGGCUUCACUUUCAGCUUGAACGUGUCUGCGUGCAUGCAUAUCAUAAGUAUGGAUAUGAGUUAGUAUAAAGAAUCAUAGCCGUUAGCGCUCAUUAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235199.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:67   CAUCAACGCUGCGCUCAAUGA   87 Target Full Sequence	0.0	Sequence 1194 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235487.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:67   CAUCAACGCUGCGCUCAAUGA   87 Target Full Sequence	0.0	Sequence 1482 from Patent EP2985353	NA	coding protein	psRNATarget
HI403357.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:67   CAUCAACGCUGCGCUCAAUGA   87 Target Full Sequence	0.0	Sequence 1482 from Patent EP2074227	NA	coding protein	psRNATarget
HI403069.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:67   CAUCAACGCUGCGCUCAAUGA   87 Target Full Sequence	0.0	Sequence 1194 from Patent EP2074227	NA	coding protein	psRNATarget
JB163530.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:67   CAUCAACGCUGCGCUCAAUGA   87 Target Full Sequence	0.0	Sequence 1194 from Patent EP2559767	NA	coding protein	psRNATarget
JB163818.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:67   CAUCAACGCUGCGCUCAAUGA   87 Target Full Sequence	0.0	Sequence 1482 from Patent EP2559767	NA	coding protein	psRNATarget
BT067465.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:800   CAUCAACGCUGCGCUCAAUGA   820 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0058N13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154470.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:811   CAUCAACGCUGCGCUCAAUGA   831 Target Full Sequence	0.0	Zea mays L-ascorbate oxidase (LOC100281551), mRNA	NA	coding protein	psRNATarget
EU957078.1	ncRNA:21   GUAGUUGCGACGCGAGUUACU   1   ||||||||||||||||||||| targets:811   CAUCAACGCUGCGCUCAAUGA   831 Target Full Sequence	0.0	Zea mays clone 1582087 L-ascorbate oxidase precursor, mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).