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BaseInfo

ncRNA ID	zma-miR172e
Species	Zea mays
Class	miRNA
Genome position	chr3:144884289-144884462 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	135 - GGAAUCUUGAUGAUGCUGCAU - 155
Stem-loop(if miRNA)	CAGCC    GG    U  UG A UG               A     ----U     CCAACAUA   CGCGUGUUCAUGCAUCCAUCGCCGC      AGCC  UGAU UC  G G  GCAUCAUCAAGAUUC CACAC     GCAUG        AUG                         C      ||||  |||| ||  | |  ||||||||||||||| |||||     |||||        |||                         G      UCGG  ACUA AG  U C  CGUAGUAGUUCUAAG GUGUG     GUAUA        UAU                         C -UAUA    GA    U  GU A GU               G     UAUGU     --------   AUAUAAUAUAUACUACGUACUACGU
Stem-loop sequence	CAGCCAGCCGGUGAUUUCUGGAGUGGCAUCAUCAAGAUUCACACACUGCAUGCCAACAUAAUGCGCGUGUUCAUGCAUCCAUCGCCGCCGCUGCAUCAUGCAUCAUAUAUAAUAUAUAUAUAUGUGUAUGUGUGGGAAUCUUGAUGAUGCUGCAUUGGAUAUCAAGGGCUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT040346.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||| targets:1512   CUGCAGCAUCAUCAGGAUUCC   1532 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254783.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||| targets:1512   CUGCAGCAUCAUCAGGAUUCC   1532 Target Full Sequence	1.5	Zea mays glossy15 (gl15), transcript variant 2, mRNA	NA	coding protein	psRNATarget
EU957469.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||| targets:1596   CUGCAGCAUCAUCAGGAUUCC   1616 Target Full Sequence	1.5	Zea mays clone 1593578 mRNA sequence	NA	coding protein	psRNATarget
U41466.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||| targets:1652   CUGCAGCAUCAUCAGGAUUCC   1672 Target Full Sequence	1.5	Zea mays Glossy15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660825.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||| targets:1761   CUGCAGCAUCAUCAGGAUUCC   1781 Target Full Sequence	1.5	PREDICTED: Zea mays glossy15 (gl15), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660824.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||| targets:1770   CUGCAGCAUCAUCAGGAUUCC   1790 Target Full Sequence	1.5	PREDICTED: Zea mays glossy15 (gl15), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ098913.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:34   CUGCAGCAUCAUCAGGAUUCU   54 Target Full Sequence	2.5	TSA: Zea mays contig34568, mRNA sequence	NA	coding protein	psRNATarget
EU957755.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:399   CUGCAGCAUCAUCAGGAUUCU   419 Target Full Sequence	2.5	Zea mays clone 1614286 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU951778.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:64   CUGCAGCAUCAUCAGGAUUCU   84 Target Full Sequence	2.5	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget
KJ727838.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1190   CUGCAGCAUCAUCAGGAUUCU   1210 Target Full Sequence	2.5	Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds	NA	coding protein	psRNATarget
KJ726939.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1466   CUGCAGCAUCAUCAGGAUUCU   1486 Target Full Sequence	2.5	Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds	NA	coding protein	psRNATarget
FJ686697.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1449   CUGCAGCAUCAUCAGGAUUCU   1469 Target Full Sequence	2.5	Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds	NA	coding protein	psRNATarget
EU974186.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1449   CUGCAGCAUCAUCAGGAUUCU   1469 Target Full Sequence	2.5	Zea mays clone 442332 floral homeotic protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088249.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1424   CUGCAGCAUCAUCAGGAUUCU   1444 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds	NA	coding protein	psRNATarget
AF048900.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1527   CUGCAGCAUCAUCAGGAUUCU   1547 Target Full Sequence	2.5	Zea mays indeterminate spikelet 1 (ids1) mRNA, complete cds	NA	coding protein	psRNATarget
AY110208.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1527   CUGCAGCAUCAUCAGGAUUCU   1547 Target Full Sequence	2.5	Zea mays CL1812_1 mRNA sequence	NA	coding protein	psRNATarget
BT063357.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1497   CUGCAGCAUCAUCAGGAUUCU   1517 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0055O08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146067.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1497   CUGCAGCAUCAUCAGGAUUCU   1517 Target Full Sequence	2.5	Zea mays sister of indeterminate spikelet 1 (sid1), mRNA	NA	coding protein	psRNATarget
NM_001111434.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1534   CUGCAGCAUCAUCAGGAUUCU   1554 Target Full Sequence	2.5	Zea mays indeterminate spikelet 1 (ids1), mRNA	NA	coding protein	psRNATarget
XM_008649847.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1603   CUGCAGCAUCAUCAGGAUUCU   1623 Target Full Sequence	2.5	PREDICTED: Zea mays indeterminate spikelet 1 (ids1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652800.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1563   CUGCAGCAUCAUCAGGAUUCU   1583 Target Full Sequence	2.5	PREDICTED: Zea mays sister of indeterminate spikelet 1 (sid1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001328266.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1872   CUGCAGCAUCAUCAGGAUUCU   1892 Target Full Sequence	2.5	Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), mRNA	NA	coding protein	psRNATarget
XM_020539160.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1960   CUGCAGCAUCAUCAGGAUUCU   1980 Target Full Sequence	2.5	PREDICTED: Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658315.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1859   CUGCAGCAUCAUCAGGAUUCU   1879 Target Full Sequence	2.5	PREDICTED: Zea mays floral homeotic protein APETALA 2 (LOC103635944), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650369.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:2004   CUGCAGCAUCAUCAGGAUUCU   2024 Target Full Sequence	2.5	PREDICTED: Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658314.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||= targets:1891   CUGCAGCAUCAUCAGGAUUCU   1911 Target Full Sequence	2.5	PREDICTED: Zea mays floral homeotic protein APETALA 2 (LOC103635944), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KJ727553.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:692   CUGCAGCAUCAUCACGAUUCC   712 Target Full Sequence	1.5	Zea mays clone pUT5413 AP2-EREBP transcription factor (EREB212) mRNA, partial cds	NA	coding protein	psRNATarget
BT062696.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:897   CUGCAGCAUCAUCACGAUUCC   917 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0334I17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174720.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:897   CUGCAGCAUCAUCACGAUUCC   917 Target Full Sequence	1.5	Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), mRNA	NA	coding protein	psRNATarget
EU947402.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:541   CUGCAGCAUCAUCACGAUUCC   561 Target Full Sequence	1.5	Zea mays clone 342363 mRNA sequence	NA	coding protein	psRNATarget
BT060890.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:900   CUGCAGCAUCAUCACGAUUCC   920 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0066G16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545131.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1105   CUGCAGCAUCAUCACGAUUCC   1125 Target Full Sequence	1.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663895.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1440   CUGCAGCAUCAUCACGAUUCC   1460 Target Full Sequence	1.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001153337.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1556   CUGCAGCAUCAUCACGAUUCC   1576 Target Full Sequence	1.5	Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), mRNA	NA	coding protein	psRNATarget
BT056188.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1556   CUGCAGCAUCAUCACGAUUCC   1576 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669654.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1827   CUGCAGCAUCAUCACGAUUCC   1847 Target Full Sequence	1.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547687.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1945   CUGCAGCAUCAUCACGAUUCC   1965 Target Full Sequence	1.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547686.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1948   CUGCAGCAUCAUCACGAUUCC   1968 Target Full Sequence	1.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547685.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||*|||||| targets:1951   CUGCAGCAUCAUCACGAUUCC   1971 Target Full Sequence	1.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235226.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1221 from Patent EP2985353	NA	coding protein	psRNATarget
HI403096.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1221 from Patent EP2074227	NA	coding protein	psRNATarget
JB163858.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1522 from Patent EP2559767	NA	coding protein	psRNATarget
HI403397.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1522 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235527.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1522 from Patent EP2985353	NA	coding protein	psRNATarget
JB163557.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1221 from Patent EP2559767	NA	coding protein	psRNATarget
HI408947.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 7072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241077.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 7072 from Patent EP2985353	NA	coding protein	psRNATarget
JB169408.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:11   GUGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 7072 from Patent EP2559767	NA	coding protein	psRNATarget
EU945504.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =|||||||*|||||||||||* targets:1002   GUGCAGCACCAUCAAGAUUCA   1022 Target Full Sequence	2.5	Zea mays clone 275445 mRNA sequence	NA	coding protein	psRNATarget
LQ235510.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:8   GCGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1505 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235210.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:8   GCGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1205 from Patent EP2985353	NA	coding protein	psRNATarget
HI403080.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:8   GCGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1205 from Patent EP2074227	NA	coding protein	psRNATarget
JB163541.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:8   GCGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1205 from Patent EP2559767	NA	coding protein	psRNATarget
HI403380.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:8   GCGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1505 from Patent EP2074227	NA	coding protein	psRNATarget
JB163841.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:8   GCGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1505 from Patent EP2559767	NA	coding protein	psRNATarget
JA894830.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:21   GAGUGGCAUCAUCAAGAUUCA   41 Target Full Sequence	3.0	Sequence 147 from Patent WO2011067745	NA	coding protein	psRNATarget
EU974220.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:381   GAGUGGCAUCAUCAAGAUUCA   401 Target Full Sequence	3.0	Zea mays clone 443205 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151781.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1   =*|==|||||||||||||||* targets:381   GAGUGGCAUCAUCAAGAUUCA   401 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278541 (LOC100278541), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:21775315 "MicroRNAs support a turtle + lizard clade"; Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ; Biol Lett. 8:104-107(2012).