ncRNA ID | zma-miR167a-3p |
Species | Zea mays |
Class | miRNA |
Genome position | chr3:119175685-119175874 [+] |
Reference genome | RefGen_v2 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 151 - GAUCAUGCAUGACAGCCUCAUU - 172 |
Stem-loop(if miRNA) |
U     -----  C   U      A    C  -            UC       GUU     CAUAUUAGC     UCCAC      -      U      -    GCUCU     UG GAA GAGUGA GCUG CA GCAUGAUCUAGC  UGAUUUG   GGCAC         AGGCG     GCACAG CUAGAC AGAGUG GCC  |||||     || ||| |||||| |||| || ||||||||||||  |||||||   |||||         |||||     |||||| |||||| |||||| ||U  CGGGG     AC CUU CUUACU CGAC GU CGUACUAGAUUG  GCUAAAC   CCGUG         UUCGC     UGUGUC GGUCUG UCUCGC CGC -     UCUUA  A   C      C    A  A            UU       -GU     --------U     ---UC      U      C      G   |
Stem-loop sequence | UGCUCUUGCGAAUGAGUGAAGCUGCCAGCAUGAUCUAGCUCUGAUUUGGUUGGCACCAUAUUAGCAGGCGUCCACGCACAGCUAGACUAGAGUGGCCUCGCGCGCUCUCGUCUGGUCUGUGUCUCGCUUUGUGCCUGCAAAUCGUUGUUAGAUCAUGCAUGACAGCCUCAUUCCUUCACAAUUCUGGGGC |
1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |