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BaseInfo

ncRNA ID	zma-miR169m-5p
Species	Zea mays
Class	miRNA
Genome position	chr3:96704652-96704752 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	80 - UAGCCAAGAAUGGCUUGCCUA - 100
Stem-loop(if miRNA)	--              CU    U   -     U    UG        A    G   UUAGCCAAGAAUGG  UGCC AUC UCCAU AUUU  UUCAUCGC GGAA C   ||||||||||||||  |||| ||| ||||| ||||  |||||||| ||||   AAUCGGUUCUUACC  ACGG UAG AGGUG UAAA  AGGUAGUG CCUU C UG              -U    -   U     -    GU        -    C
Stem-loop sequence	UUAGCCAAGAAUGGCUUGCCUAUCUCCAUUAUUUUGUUCAUCGCAGGAAGCCCUUCCGUGAUGGAUGAAAUGUGGAUGAUGGCAUCCAUUCUUGGCUAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238104.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||||||||||||||| targets:91   UAGGCAAGCCAUUCUUGGCUA   111 Target Full Sequence	0.0	Sequence 4099 from Patent EP2985353	NA	coding protein	psRNATarget
JB166435.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||||||||||||||| targets:91   UAGGCAAGCCAUUCUUGGCUA   111 Target Full Sequence	0.0	Sequence 4099 from Patent EP2559767	NA	coding protein	psRNATarget
HI405974.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||||||||||||||| targets:91   UAGGCAAGCCAUUCUUGGCUA   111 Target Full Sequence	0.0	Sequence 4099 from Patent EP2074227	NA	coding protein	psRNATarget
HI405806.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||=|||||||||||| targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	1.5	Sequence 3931 from Patent EP2074227	NA	coding protein	psRNATarget
JB166267.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||=|||||||||||| targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	1.5	Sequence 3931 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237936.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||=|||||||||||| targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	1.5	Sequence 3931 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008661589.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:656   GCGGCUAGCCAUUCUUGGCUU   676 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661591.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:1359   GCGGCUAGCCAUUCUUGGCUU   1379 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008661588.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:1359   GCGGCUAGCCAUUCUUGGCUU   1379 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661590.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:1516   GCGGCUAGCCAUUCUUGGCUU   1536 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X3, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).