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BaseInfo

ncRNA ID	zma-miR159f-5p
Species	Zea mays
Class	miRNA
Genome position	chr3:25490976-25491190 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	194 - GAGCUCCUCUCAUUCCAAUGA - 214
Stem-loop(if miRNA)	--        UC   U     U  AG  U  UUC  AA    -   U C   G    U     GUUC    UAU         ------UC - -  UUUGCGUGUCUUCGAG   GGAGCUCC  UCA UCCAA GA  GG CC   CG  GGGU GGU C GCU CUCG UCAUG    CCAC   CCUAUCUCA        C A UG                A   ||||||||  ||| ||||| ||  || ||   ||  |||| ||| | ||| |||| |||||    ||||   |||||||||        | | ||   UCUCGAGG  AGU AGGUU CU  CC GG   GU  CCCA CCA G CGA GAGC AGUAC    GGUG   GGAUAGAGU        G U UC                G CG        GA   U     U  CG  -  -UC  GC    G   C U   G    C     GUUU    UUC         UUUCCGCU G G  CUUAGAGAAGGCGAAG
Stem-loop sequence	GGAGCUCCUCUCAUUCCAAUGAAGGGUCCUUCCGAAGGGUGGUUCCGCUGCUCGUUCAUGGUUCCCACUAUCCUAUCUCAUCCAUGUUUGCGUGUCUUCGAGAGGAAGCGGAAGAGAUUCCUGUGGUCGCCUUUUGAGAUAGGCUUGUGGUUUGCAUGACCGAGGAGCUGCACCGACCCCGUGCUGGCCGCUCUUUGGAUUGAAGGGAGCUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT083709.2	ncRNA:21   AGUAACCUUACUCUCCUCGAG   1   **|*|||||*||||||||||| targets:1396   GGAGUGGAAGGAGAGGAGCUC   1416 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0030J16 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).