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BaseInfo

ncRNA ID zma-miR393b-5p
Species Zea mays
Class miRNA
Genome position chr3:18638816-18638923 [+]
Reference genome RefGen_v2
Source miRBase
Length 22
Mature sequence(if miRNA) 2 - UCCAAAGGGAUCGCAUUGAUCC - 23
Stem-loop(if miRNA) --G                         --AUU  UU  AUUUUUUCAUGCAUGGC
   UCCAAAGGGAUCGCAUUGAUCCAUC     CC  CC                 U
   |||||||||||||||||||||||||     ||  ||
   AGGUUUUCCUAGCGUAACUAGGUAG     CA  GG                 G
CGG                         CUGUU  --  AACGUCUGCUGCUUCUG
Stem-loop sequence GUCCAAAGGGAUCGCAUUGAUCCAUCAUUCCUUCCAUUUUUUCAUGCAUGGCUGGUCUUCGUCGUCUGCAAGGACUUGUCGAUGGAUCAAUGCGAUCCUUUUGGAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402916.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||||||||||||||||||
targets:84   AGAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2074227 NA coding protein psRNATarget
LQ235329.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||||||||||||||||||
targets:84   AGAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2985353 NA coding protein psRNATarget
JB163660.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||||||||||||||||||
targets:84   AGAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2559767 NA coding protein psRNATarget
JB163377.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||||||||||||||||||
targets:84   AGAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2559767 NA coding protein psRNATarget
LQ235046.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||||||||||||||||||
targets:84   AGAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2985353 NA coding protein psRNATarget
HI403199.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||||||||||||||||||
targets:84   AGAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2074227 NA coding protein psRNATarget
AY105491.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:38   GGAGACAAUGCGAUCCCUUUGGA   60

3.0 Zea mays PCO100080 mRNA sequence NA coding protein psRNATarget
EU946483.1
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:274   GGAGACAAUGCGAUCCCUUUGGA   296

3.0 Zea mays clone 313513 mRNA sequence NA coding protein psRNATarget
XM_008658274.2
ncRNA:22   CCUA-GUUACGCUAGGGAAACCU   1
  |||*-||||||||||||||||||
targets:1714   GGAGACAAUGCGAUCCCUUUGGA   1736

3.0 PREDICTED: Zea mays transport inhibitor response 1-like protein Os05g0150500 (LOC103635896), mRNA NA coding protein psRNATarget
JB163820.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||=|||*|||||||||||
targets:75   AGAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2559767 NA coding protein psRNATarget
LQ235489.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||=|||*|||||||||||
targets:75   AGAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2985353 NA coding protein psRNATarget
HI403071.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||=|||*|||||||||||
targets:75   AGAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2074227 NA coding protein psRNATarget
JB163532.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||=|||*|||||||||||
targets:75   AGAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2559767 NA coding protein psRNATarget
LQ235201.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||=|||*|||||||||||
targets:75   AGAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2985353 NA coding protein psRNATarget
HI403359.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  *|||||=|||*|||||||||||
targets:75   AGAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2074227 NA coding protein psRNATarget
BT017377.1
ncRNA:19   AGUUACGCUAGGGAAACCU   1
  *||||||||||||||||||
targets:1   ACAAUGCGAUCCCUUUGGA   19

1.0 Zea mays clone EL01N0325G08.c mRNA sequence NA coding protein psRNATarget
NM_001143136.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |***||||||||||||||||||
targets:1861   GACACAAUGCGAUCCCUUUGGA   1882

1.0 Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), mRNA NA coding protein psRNATarget
BT037254.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |***||||||||||||||||||
targets:1861   GACACAAUGCGAUCCCUUUGGA   1882

1.0 Zea mays full-length cDNA clone ZM_BFb0160H24 mRNA, complete cds NA coding protein psRNATarget
XM_008663266.2
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |***||||||||||||||||||
targets:2195   GACACAAUGCGAUCCCUUUGGA   2216

1.0 PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008663267.2
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  |***||||||||||||||||||
targets:2192   GACACAAUGCGAUCCCUUUGGA   2213

1.0 PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X2, mRNA NA coding protein psRNATarget
HI409977.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  **=|||=|||*|||||||||||
targets:8   CAGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2074227 NA coding protein psRNATarget
LQ242107.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  **=|||=|||*|||||||||||
targets:8   CAGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2985353 NA coding protein psRNATarget
JB170438.1
ncRNA:22   CCUAGUUACGCUAGGGAAACCU   1
  **=|||=|||*|||||||||||
targets:8   CAGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2559767 NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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