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BaseInfo

ncRNA ID zma-miR319b-3p
Species Zea mays
Class miRNA
Genome position chr3:2801942-2802154 [+]
Reference genome RefGen_v2
Source miRBase
Length 20
Mature sequence(if miRNA) 175 - UUGGACUGAAGGGUGCUCCC - 194
Stem-loop(if miRNA) GAC     U -  -U  AU   A A    GU           CU            UA        ----   G  G   AC        C  CA   C    AAACGG C
   GACGA G GC  GG  GGA G GAGC  CCUUCAGUCCA  CAGGGGCGGUGC  GGGUCGAA    UUA CU CCG  UCAUUCAC CA  UGC AAGC      C A
   ||||| | ||  ||  ||| | ||||  |||||||||||  ||||||||||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||      |
   UUGUU C CG  CC  CCU C CUCG  GGAAGUCAGGU  GUUUCUGCCACG  UCUAGCUU    AAU GA GGC  AGUAAGUG GU  ACG UUCG      G U
---     C U  CU  CU   C -    UG           UC            -C        CGAA   G  G   GA        A  AG   U    ACCAAA G
Stem-loop sequence GACGACGAUGGCUGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAGGGGCGGUGCUAGGGUCGAAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAACGGCCAUGGAAACCAGCUUUGCAGAUGAGUGAAUGAAGCGGGAGGUAAAAGCUUCGAUCUCGCACCGUCUUUGCUUGGACUGAAGGGUGCUCCCUCCUCCCUCGCUCCUUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI408665.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  ||||||||||||||||||||
targets:8   GGGAGCACCCUUCAGUCCAA   27

0.0 Sequence 6790 from Patent EP2074227 NA coding protein psRNATarget
LQ240795.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  ||||||||||||||||||||
targets:8   GGGAGCACCCUUCAGUCCAA   27

0.0 Sequence 6790 from Patent EP2985353 NA coding protein psRNATarget
JB169126.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  ||||||||||||||||||||
targets:8   GGGAGCACCCUUCAGUCCAA   27

0.0 Sequence 6790 from Patent EP2559767 NA coding protein psRNATarget
BT038569.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||||||||
targets:1140   UGGAGCCCCCUUCAGUCCAA   1159

1.0 Zea mays full-length cDNA clone ZM_BFb0287F20 mRNA, complete cds NA coding protein psRNATarget
EU973271.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||||||||
targets:1292   UGGAGCCCCCUUCAGUCCAA   1311

1.0 Zea mays clone 395942 transcription factor GAMYB mRNA, complete cds NA coding protein psRNATarget
NM_001254909.2
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||||||||
targets:1360   UGGAGCCCCCUUCAGUCCAA   1379

1.0 Zea mays transcription factor GAMYB (LOC100285651), mRNA NA coding protein psRNATarget
BT069226.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||||||||
targets:1358   UGGAGCCCCCUUCAGUCCAA   1377

1.0 Zea mays full-length cDNA clone ZM_BFb0370J04 mRNA, complete cds NA coding protein psRNATarget
BT065979.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||||||||
targets:1976   UGGAGCCCCCUUCAGUCCAA   1995

1.0 Zea mays full-length cDNA clone ZM_BFb0129D18 mRNA, complete cds NA coding protein psRNATarget
XM_020542180.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||||||||
targets:2019   UGGAGCCCCCUUCAGUCCAA   2038

1.0 PREDICTED: Zea mays transcription factor GAMYB (LOC100285651), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655165.2
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *||=||||*|||||||||||
targets:1046   CGGGGCACACUUCAGUCCAA   1065

2.5 PREDICTED: Zea mays transcription factor PCF8 (LOC103633471), mRNA NA coding protein psRNATarget
XM_008661531.2
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  **||||*|||||||||||||
targets:933   UCGAGCUCCCUUCAGUCCAA   952

2.0 PREDICTED: Zea mays myb-related protein Pp2 (LOC103638691), mRNA NA coding protein psRNATarget
EU972820.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  **||||*|||||||||||||
targets:926   UCGAGCUCCCUUCAGUCCAA   945

2.0 Zea mays clone 388684 mRNA sequence NA coding protein psRNATarget
HQ858750.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:977   UGGAGCUCCCUUCACUCCAA   996

2.5 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds NA coding protein psRNATarget
BT063828.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:1102   UGGAGCUCCCUUCACUCCAA   1121

2.5 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds NA coding protein psRNATarget
EU970886.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:1195   UGGAGCUCCCUUCACUCCAA   1214

2.5 Zea mays clone 353123 transcription factor GAMYB mRNA, complete cds NA coding protein psRNATarget
BT062692.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:1241   UGGAGCUCCCUUCACUCCAA   1260

2.5 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds NA coding protein psRNATarget
BT033925.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:1268   UGGAGCUCCCUUCACUCCAA   1287

2.5 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds NA coding protein psRNATarget
NM_001137160.1
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:1268   UGGAGCUCCCUUCACUCCAA   1287

2.5 Zea mays MYBGA transcription factor (LOC100191731), mRNA NA coding protein psRNATarget
XM_008673816.2
ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1
  *|||||*|||||||*|||||
targets:1370   UGGAGCUCCCUUCACUCCAA   1389

2.5 PREDICTED: Zea mays MYBGA transcription factor (LOC100191731), transcript variant X1, mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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