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BaseInfo

ncRNA ID	zma-miR159c-5p
Species	Zea mays
Class	miRNA
Genome position	chr3:2748321-2748537 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	175 - GAGCUCCCUUCGAUCCAAUCC - 195
Stem-loop(if miRNA)	--AU   UA   A     AUC  A                  UC  G         ----    C    G  G  G    U     G      -CUCU       CAA  -  C     GAU  AGA AGGCG   GA GAGCUCCCUUCGAUCCAA  CA GAGGGGAAG    UGGU GGUU CA CU CCGG UCAUG AUACCU     GGUGCAG   UG GC G     |||  ||| |||||   || ||||||||||||||||||  || |||||||||    |||| |||| || || |||| ||||| ||||||     |||||||   || ||     CUG  UCU UCUGU   CU CUCGAGGGAAGUUAGGUU  GU CUCCCUUUC    ACCG CCGA GU GA GGCC AGUAC UGUGGG     UCACGUC   AC CG C CUGU   --   G     -CU  C                  -C  G         UACU    C    -  A  G    C     G      UACGU       UCC  U  U
Stem-loop sequence	AUGAUUAAGAAAGGCGAUCGAAGAGCUCCCUUCGAUCCAAUCCAGGAGGGGAAGUGGUCGGUUGCAGCUGCCGGUUCAUGGAUACCUCUCUGGUGCAGCAAUGGCCGCUGCUCACCUCUGCACUUGCAUGGGUGUGCAUGACCCGGGAGAUGAGCCCGCCAUCAUCUUUCCCUCGUGCUUGGAUUGAAGGGAGCUCCUCUCUGUCUGUCUGUCUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163587.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:170   UGUUUGGAUUGAAGGGAGCUC   190 Target Full Sequence	2.5	Sequence 1251 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235256.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:170   UGUUUGGAUUGAAGGGAGCUC   190 Target Full Sequence	2.5	Sequence 1251 from Patent EP2985353	NA	coding protein	psRNATarget
JB163893.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:170   UGUUUGGAUUGAAGGGAGCUC   190 Target Full Sequence	2.5	Sequence 1557 from Patent EP2559767	NA	coding protein	psRNATarget
HI403126.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:170   UGUUUGGAUUGAAGGGAGCUC   190 Target Full Sequence	2.5	Sequence 1251 from Patent EP2074227	NA	coding protein	psRNATarget
HI403432.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:170   UGUUUGGAUUGAAGGGAGCUC   190 Target Full Sequence	2.5	Sequence 1557 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235562.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:170   UGUUUGGAUUGAAGGGAGCUC   190 Target Full Sequence	2.5	Sequence 1557 from Patent EP2985353	NA	coding protein	psRNATarget
EU968889.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:235   UGCUUGGAUUGAAGGGAGCUC   255 Target Full Sequence	2.5	Zea mays clone 324744 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958700.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:251   UGCUUGGAUUGAAGGGAGCUC   271 Target Full Sequence	2.5	Zea mays clone 1710224 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958546.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:251   UGCUUGGAUUGAAGGGAGCUC   271 Target Full Sequence	2.5	Zea mays clone 1701645 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968724.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|*||||||=||||||||||| targets:276   UGCUUGGAUUGAAGGGAGCUC   296 Target Full Sequence	2.5	Zea mays clone 323714 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ241097.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:197   UCUUUGGAUUGAAGGGAGCUC   217 Target Full Sequence	2.5	Sequence 7092 from Patent EP2985353	NA	coding protein	psRNATarget
JB169428.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:197   UCUUUGGAUUGAAGGGAGCUC   217 Target Full Sequence	2.5	Sequence 7092 from Patent EP2559767	NA	coding protein	psRNATarget
HI408967.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:197   UCUUUGGAUUGAAGGGAGCUC   217 Target Full Sequence	2.5	Sequence 7092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240691.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:202   UCUUUGGAUUGAAGGGAGCUC   222 Target Full Sequence	2.5	Sequence 6686 from Patent EP2985353	NA	coding protein	psRNATarget
HI408561.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:202   UCUUUGGAUUGAAGGGAGCUC   222 Target Full Sequence	2.5	Sequence 6686 from Patent EP2074227	NA	coding protein	psRNATarget
JB169022.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:202   UCUUUGGAUUGAAGGGAGCUC   222 Target Full Sequence	2.5	Sequence 6686 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001327981.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:495   UCUUUGGAUUGAAGGGAGCUC   515 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192882 (cl16330_1), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU955086.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:493   UCUUUGGAUUGAAGGGAGCUC   513 Target Full Sequence	2.5	Zea mays clone 1509037 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT034981.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:469   UCUUUGGAUUGAAGGGAGCUC   489 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0030N13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138070.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:469   UCUUUGGAUUGAAGGGAGCUC   489 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192882 (cl16330_1), mRNA	NA	coding protein	psRNATarget
EU953334.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   ***||||||=||||||||||| targets:487   UCUUUGGAUUGAAGGGAGCUC   507 Target Full Sequence	2.5	Zea mays clone 1399743 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546009.1	ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1   *|||*||||||||||*||||| targets:263   AGAUCGGAUCGAAGGUAGCUC   283 Target Full Sequence	2.5	PREDICTED: Zea mays homeobox-leucine zipper protein ROC7 (LOC103641332), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).