Search result

BaseInfo

ncRNA ID	zma-miR164a-3p
Species	Zea mays
Class	miRNA
Genome position	chr2:216627448-216627599 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	17 - CACGUGUUCUCCUUCUCCAUC - 37
Stem-loop(if miRNA)	C     C       A  C        C           A    CAUACCAUAU   U  - C  UGUUCUCUCUCGCUCCG  AGUGA AAGGACC CG UGGAGAAG AGGGCACGUGC UGCG          AGC AG A GA                 C  ||||| ||||||| || |||||||| ||||||||||| ||||          ||| || | ||  UCACU UUUCUGG GC ACCUCUUC UCUUGUGCACG ACGC          UGG GU G GU                 U U     C       A  U        C           C    ---------A   -  A -  AUGUACUUCGAACCAGC
Stem-loop sequence	CAGUGACAAGGACCACGCUGGAGAAGCAGGGCACGUGCAUGCGCAUACCAUAUAGCUAGACGAUGUUCUCUCUCGCUCCGCUCGACCAAGCUUCAUGUAUGGAUGGGUACGCACGCACGUGUUCUCCUUCUCCAUCGAGGUCUUUCUCACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163605.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1269 from Patent EP2559767	NA	coding protein	psRNATarget
HI403144.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235241.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1236 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235543.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1538 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235274.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1269 from Patent EP2985353	NA	coding protein	psRNATarget
JB163572.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1236 from Patent EP2559767	NA	coding protein	psRNATarget
HI403111.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1236 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235583.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1578 from Patent EP2985353	NA	coding protein	psRNATarget
JB163914.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1578 from Patent EP2559767	NA	coding protein	psRNATarget
HI403453.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1578 from Patent EP2074227	NA	coding protein	psRNATarget
HI403413.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1538 from Patent EP2074227	NA	coding protein	psRNATarget
JB163874.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   ||||||||||||||*|||||| targets:8   GAUGGAGAAGGAGACCACGUG   28 Target Full Sequence	1.5	Sequence 1538 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008655587.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   |||||||||||*||||||||* targets:241   GAUGGAGAAGGCGAACACGUC   261 Target Full Sequence	2.5	PREDICTED: Zea mays nucleophosmin-like (LOC103633929), mRNA	NA	coding protein	psRNATarget
NM_001157312.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   |=||||*||||||||||||*| targets:201   GGUGGACAAGGAGAACACGAG   221 Target Full Sequence	2.5	Zea mays aquaporin NIP5.1 (LOC100284417), mRNA	NA	coding protein	psRNATarget
EU968245.1	ncRNA:21   CUACCUCUUCCUCUUGUGCAC   1   |=||||*||||||||||||*| targets:201   GGUGGACAAGGAGAACACGAG   221 Target Full Sequence	2.5	Zea mays clone 317430 aquaporin NIP5.1 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).