ncRNA ID | zma-miR169j-3p |
Species | Zea mays |
Class | miRNA |
Genome position | chr2:192700339-192700489 [+] |
Reference genome | RefGen_v2 |
Source | miRBase |
Length | 18 |
Mature sequence(if miRNA) | 116 - GGCAGUCUCCUUGGCUAG - 133 |
Stem-loop(if miRNA) |
GCG     -A        A   -         U    U        CU  UU    UG  UU   UC      AACCU  U    AUAAG  GUCUGUCC GAU AGCCAAGGA GACU GCCUGUGG  UC  GGCU  GC  GGC  GGGCAA     UG G    |||||  |||||||| ||| ||||||||| |||| ||||||||  ||  ||||  ||  |||  ||||||     ||    UAUUC  CGGGCGGG CUG UCGGUUCCU CUGA CGGACACU  AG  CCGG  UG  CCG  CUCGUU     GC C ---     CC        C   A         -    -        --  CU    --  CU   --      AUUUU  A |
Stem-loop sequence | GCGAUAAGAGUCUGUCCAGAUAGCCAAGGAUGACUUGCCUGUGGCUUCUUGGCUUGGCUUGGCUCGGGCAAAACCUUGUGCACGUUUUAUUGCUCGCCUCGUGGCCUCGAUCACAGGCAGUCUCCUUGGCUAGUCCGGGCGGGCCCCUUAU |
1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |