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BaseInfo

ncRNA ID zma-miR169j-3p
Species Zea mays
Class miRNA
Genome position chr2:192700339-192700489 [+]
Reference genome RefGen_v2
Source miRBase
Length 18
Mature sequence(if miRNA) 116 - GGCAGUCUCCUUGGCUAG - 133
Stem-loop(if miRNA) GCG     -A        A   -         U    U        CU  UU    UG  UU   UC      AACCU  U
   AUAAG  GUCUGUCC GAU AGCCAAGGA GACU GCCUGUGG  UC  GGCU  GC  GGC  GGGCAA     UG G
   |||||  |||||||| ||| ||||||||| |||| ||||||||  ||  ||||  ||  |||  ||||||     ||
   UAUUC  CGGGCGGG CUG UCGGUUCCU CUGA CGGACACU  AG  CCGG  UG  CCG  CUCGUU     GC C
---     CC        C   A         -    -        --  CU    --  CU   --      AUUUU  A
Stem-loop sequence GCGAUAAGAGUCUGUCCAGAUAGCCAAGGAUGACUUGCCUGUGGCUUCUUGGCUUGGCUUGGCUCGGGCAAAACCUUGUGCACGUUUUAUUGCUCGCCUCGUGGCCUCGAUCACAGGCAGUCUCCUUGGCUAGUCCGGGCGGGCCCCUUAU

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).