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BaseInfo

ncRNA ID	zma-miR398a-3p
Species	Zea mays
Class	miRNA
Genome position	chr2:169527758-169527897 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	119 - UGUGUUCUCAGGUCGCCCCCG - 139
Stem-loop(if miRNA)	--        A             AGAAUA UG   UGAGAUUGCUCGCCUCGCGGUACGGUUCGUGCUGGCC   GGGGGCGA CUGAGAACACAUG      A  AGA                                     U   |||||||| |||||||||||||      |  |||   CCCCCGCU GACUCUUGUGUAC      C  GUA                                     G CG        G             ----GU --   AUAAUACGCAUGUUCUACUUGCCGCUGCUGCCACCAG
Stem-loop sequence	GGGGGCGAACUGAGAACACAUGAGAAUAAUGAGAUGAGAUUGCUCGCCUCGCGGUACGGUUCGUGCUGGCCUGGACCACCGUCGUCGCCGUUCAUCUUGUACGCAUAAUAAUGCUGCAUGUGUUCUCAGGUCGCCCCCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ237968.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:8   CGGGGGCGACCUGAGAACACA   28 Target Full Sequence	0.0	Sequence 3963 from Patent EP2985353	NA	coding protein	psRNATarget
HI405838.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:8   CGGGGGCGACCUGAGAACACA   28 Target Full Sequence	0.0	Sequence 3963 from Patent EP2074227	NA	coding protein	psRNATarget
JB166299.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:8   CGGGGGCGACCUGAGAACACA   28 Target Full Sequence	0.0	Sequence 3963 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235505.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:9   CGGGGGCGACCUGAGAACACA   29 Target Full Sequence	0.0	Sequence 1500 from Patent EP2985353	NA	coding protein	psRNATarget
HI403074.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:9   CGGGGGCGACCUGAGAACACA   29 Target Full Sequence	0.0	Sequence 1199 from Patent EP2074227	NA	coding protein	psRNATarget
HI403375.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:9   CGGGGGCGACCUGAGAACACA   29 Target Full Sequence	0.0	Sequence 1500 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235204.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:9   CGGGGGCGACCUGAGAACACA   29 Target Full Sequence	0.0	Sequence 1199 from Patent EP2985353	NA	coding protein	psRNATarget
JB163535.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:9   CGGGGGCGACCUGAGAACACA   29 Target Full Sequence	0.0	Sequence 1199 from Patent EP2559767	NA	coding protein	psRNATarget
JB163836.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:9   CGGGGGCGACCUGAGAACACA   29 Target Full Sequence	0.0	Sequence 1500 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242312.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:11   CGGGGGCGACCUGAGAACACA   31 Target Full Sequence	0.0	Sequence 8307 from Patent EP2985353	NA	coding protein	psRNATarget
HI410182.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:11   CGGGGGCGACCUGAGAACACA   31 Target Full Sequence	0.0	Sequence 8307 from Patent EP2074227	NA	coding protein	psRNATarget
JB170643.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   ||||||||||||||||||||| targets:11   CGGGGGCGACCUGAGAACACA   31 Target Full Sequence	0.0	Sequence 8307 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235418.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:9   CGGGGGCGAACUGAGAACACA   29 Target Full Sequence	1.5	Sequence 1413 from Patent EP2985353	NA	coding protein	psRNATarget
HI403288.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:9   CGGGGGCGAACUGAGAACACA   29 Target Full Sequence	1.5	Sequence 1413 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235134.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:9   CGGGGGCGAACUGAGAACACA   29 Target Full Sequence	1.5	Sequence 1129 from Patent EP2985353	NA	coding protein	psRNATarget
JB163465.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:9   CGGGGGCGAACUGAGAACACA   29 Target Full Sequence	1.5	Sequence 1129 from Patent EP2559767	NA	coding protein	psRNATarget
JB163749.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:9   CGGGGGCGAACUGAGAACACA   29 Target Full Sequence	1.5	Sequence 1413 from Patent EP2559767	NA	coding protein	psRNATarget
HI403004.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:9   CGGGGGCGAACUGAGAACACA   29 Target Full Sequence	1.5	Sequence 1129 from Patent EP2074227	NA	coding protein	psRNATarget
EU942803.1	ncRNA:21   GCCCCCGCUGGACUCUUGUGU   1   |||||||||*||||||||||| targets:201   CGGGGGCGAACUGAGAACACA   221 Target Full Sequence	1.5	Zea mays clone 1537343 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).