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BaseInfo

ncRNA ID	zma-miR398a-5p
Species	Zea mays
Class	miRNA
Genome position	chr2:169527758-169527897 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - GGGGCGAACUGAGAACACAUG - 22
Stem-loop(if miRNA)	--        A             AGAAUA UG   UGAGAUUGCUCGCCUCGCGGUACGGUUCGUGCUGGCC   GGGGGCGA CUGAGAACACAUG      A  AGA                                     U   |||||||| |||||||||||||      |  |||   CCCCCGCU GACUCUUGUGUAC      C  GUA                                     G CG        G             ----GU --   AUAAUACGCAUGUUCUACUUGCCGCUGCUGCCACCAG
Stem-loop sequence	GGGGGCGAACUGAGAACACAUGAGAAUAAUGAGAUGAGAUUGCUCGCCUCGCGGUACGGUUCGUGCUGGCCUGGACCACCGUCGUCGCCGUUCAUCUUGUACGCAUAAUAAUGCUGCAUGUGUUCUCAGGUCGCCCCCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549350.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   ||||||||||||||||||||| targets:242   CAUGUGUUCUCAGUUCGCCCC   262 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100384429 (LOC100384429), mRNA	NA	coding protein	psRNATarget
BT070093.2	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   ||||||||||||||||||||| targets:1278   CAUGUGUUCUCAGUUCGCCCC   1298 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0010C06 mRNA, complete cds	NA	coding protein	psRNATarget
JB166307.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:93   CAUGUGUUCUCAGGUCGCCCC   113 Target Full Sequence	1.5	Sequence 3971 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237976.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:93   CAUGUGUUCUCAGGUCGCCCC   113 Target Full Sequence	1.5	Sequence 3971 from Patent EP2985353	NA	coding protein	psRNATarget
HI405846.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:93   CAUGUGUUCUCAGGUCGCCCC   113 Target Full Sequence	1.5	Sequence 3971 from Patent EP2074227	NA	coding protein	psRNATarget
HI408600.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:95   CAUGUGUUCUCAGGUCGCCCC   115 Target Full Sequence	1.5	Sequence 6725 from Patent EP2074227	NA	coding protein	psRNATarget
HI408705.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:95   CAUGUGUUCUCAGGUCGCCCC   115 Target Full Sequence	1.5	Sequence 6830 from Patent EP2074227	NA	coding protein	psRNATarget
JB169166.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:95   CAUGUGUUCUCAGGUCGCCCC   115 Target Full Sequence	1.5	Sequence 6830 from Patent EP2559767	NA	coding protein	psRNATarget
JB169061.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:95   CAUGUGUUCUCAGGUCGCCCC   115 Target Full Sequence	1.5	Sequence 6725 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240730.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:95   CAUGUGUUCUCAGGUCGCCCC   115 Target Full Sequence	1.5	Sequence 6725 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240835.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:95   CAUGUGUUCUCAGGUCGCCCC   115 Target Full Sequence	1.5	Sequence 6830 from Patent EP2985353	NA	coding protein	psRNATarget
JB163749.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:126   CAUGUGUUCUCAGGUCGCCCC   146 Target Full Sequence	1.5	Sequence 1413 from Patent EP2559767	NA	coding protein	psRNATarget
HI403288.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:126   CAUGUGUUCUCAGGUCGCCCC   146 Target Full Sequence	1.5	Sequence 1413 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235134.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:126   CAUGUGUUCUCAGGUCGCCCC   146 Target Full Sequence	1.5	Sequence 1129 from Patent EP2985353	NA	coding protein	psRNATarget
JB163465.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:126   CAUGUGUUCUCAGGUCGCCCC   146 Target Full Sequence	1.5	Sequence 1129 from Patent EP2559767	NA	coding protein	psRNATarget
HI403004.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:126   CAUGUGUUCUCAGGUCGCCCC   146 Target Full Sequence	1.5	Sequence 1129 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235418.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:126   CAUGUGUUCUCAGGUCGCCCC   146 Target Full Sequence	1.5	Sequence 1413 from Patent EP2985353	NA	coding protein	psRNATarget
HI405831.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:299   CAUGUGUUCUCAGGUCGCCCC   319 Target Full Sequence	1.5	Sequence 3956 from Patent EP2074227	NA	coding protein	psRNATarget
JB166292.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:299   CAUGUGUUCUCAGGUCGCCCC   319 Target Full Sequence	1.5	Sequence 3956 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237961.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:299   CAUGUGUUCUCAGGUCGCCCC   319 Target Full Sequence	1.5	Sequence 3956 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001351636.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:141   CAUGUGUUCUCAGGUCGCCCC   161 Target Full Sequence	1.5	Zea mays uncharacterized LOC100274660 (LOC100274660), mRNA	NA	coding protein	psRNATarget
EU952026.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:141   CAUGUGUUCUCAGGUCGCCCC   161 Target Full Sequence	1.5	Zea mays clone 1065064 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU940707.1	ncRNA:21   GUACACAAGAGUCAAGCGGGG   1   |||||||||||||*||||||| targets:185   CAUGUGUUCUCAGGUCGCCCC   205 Target Full Sequence	1.5	Zea mays clone 1000501 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).