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BaseInfo

ncRNA ID	zma-miR399e-5p
Species	Zea mays
Class	miRNA
Genome position	chr2:16341824-16341947 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	82 - GGGCUUCUCUUUCUUGGCAGG - 102
Stem-loop(if miRNA)	AUGCC      --    A   U      UU     UC         ---------A    U    U  C      UAAGCU  GUCC GUU CAGGGC  CUCUU  UUGGCAGGG          AGCA GAGA GC A      ||||||  |||| ||| ||||||  |||||  |||||||||          |||| |||| ||      AUUCGA  CAGG CAA GUCCCG  GAGAG  AACCGUCUC          UCGU CUCU CG U ---GU      CU    A   U      UU     GA         CCAACUUCUC    -    -  A
Stem-loop sequence	AUGCCUAAGCUGUCCAGUUUCAGGGCUUCUCUUUCUUGGCAGGGAAGCAUGAGAUGCCAUAGCUCUCUGCUCUCUUCAACCCUCUGCCAAAGGAGAGUUGCCCUGUAACAGGACUCAGCUUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235570.1	ncRNA:21   GGACGGUUCUUUCUCUUCGGG   1   ||||||||||||||||||||| targets:73   CCUGCCAAGAAAGAGAAGCCC   93 Target Full Sequence	0.0	Sequence 1565 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235262.1	ncRNA:21   GGACGGUUCUUUCUCUUCGGG   1   ||||||||||||||||||||| targets:73   CCUGCCAAGAAAGAGAAGCCC   93 Target Full Sequence	0.0	Sequence 1257 from Patent EP2985353	NA	coding protein	psRNATarget
JB163593.1	ncRNA:21   GGACGGUUCUUUCUCUUCGGG   1   ||||||||||||||||||||| targets:73   CCUGCCAAGAAAGAGAAGCCC   93 Target Full Sequence	0.0	Sequence 1257 from Patent EP2559767	NA	coding protein	psRNATarget
HI403132.1	ncRNA:21   GGACGGUUCUUUCUCUUCGGG   1   ||||||||||||||||||||| targets:73   CCUGCCAAGAAAGAGAAGCCC   93 Target Full Sequence	0.0	Sequence 1257 from Patent EP2074227	NA	coding protein	psRNATarget
HI403440.1	ncRNA:21   GGACGGUUCUUUCUCUUCGGG   1   ||||||||||||||||||||| targets:73   CCUGCCAAGAAAGAGAAGCCC   93 Target Full Sequence	0.0	Sequence 1565 from Patent EP2074227	NA	coding protein	psRNATarget
JB163901.1	ncRNA:21   GGACGGUUCUUUCUCUUCGGG   1   ||||||||||||||||||||| targets:73   CCUGCCAAGAAAGAGAAGCCC   93 Target Full Sequence	0.0	Sequence 1565 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).