Search result

BaseInfo

ncRNA ID	zma-miR395a-3p
Species	Zea mays
Class	miRNA
Genome position	chr2:6333397-6333545 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - GUGAAGUGUUUGGGGGAACUC - 40
Stem-loop(if miRNA)	UAUUG        U    UG         U     C      G U       C     AGUUUAA    ACUG      C      GUUGGUUG CACC  GAGUUCUCC CAAAC ACUUCA U GCUGCAC UAGCU       UGGC    UGCUUG G      |||||||| ||||  ||||||||| ||||| |||||| | ||||||| |||||       ||||    ||||||      CGACUAAC GUGG  CUCAAGGGG GUUUG UGAAGU A CGAUGUG GUCGA       GCCG    GCGAAC U -UUAA        U    GU         -     -      G U       U     ------G    ----      G
Stem-loop sequence	UAUUGGUUGGUUGUCACCUGGAGUUCUCCUCAAACCACUUCAGUUGCUGCACCUAGCUAGUUUAAUGGCACUGUGCUUGCGUGCAAGCGGCCGGAGCUGUGUGUAGCUAGUGAAGUGUUUGGGGGAACUCUGGGUGUCAAUCAGCAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF016305.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   |||||||=||||||||||||| targets:455   GAGUUCCUCCAAACACUUCAC   475 Target Full Sequence	1.0	Zea mays ATP sulfurylase mRNA, complete cds	NA	coding protein	psRNATarget
AY109520.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   |||||||=||||||||||||| targets:455   GAGUUCCUCCAAACACUUCAC   475 Target Full Sequence	1.0	Zea mays CL30_1 mRNA sequence	NA	coding protein	psRNATarget
EU973074.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   |||||||=||||||||||||= targets:418   GAGUUCCUCCAAACACUUCAU   438 Target Full Sequence	2.0	Zea mays clone 392860 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase mRNA, complete cds	NA	coding protein	psRNATarget
BT063912.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   |||||||=||||||||||||= targets:426   GAGUUCCUCCAAACACUUCAU   446 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0119G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301511.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   |||||||=||||||||||||= targets:426   GAGUUCCUCCAAACACUUCAU   446 Target Full Sequence	2.0	Zea mays ATP-sulfurylase 3, chloroplastic-like (LOC103643994), mRNA	NA	coding protein	psRNATarget
NM_001309873.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   |||||=||||||||||||||= targets:353   GAGUUUCCCCAAACACUUCAU   373 Target Full Sequence	2.0	Zea mays Sulfate transporter 2.2 (gpm291), mRNA	NA	coding protein	psRNATarget
XM_008648186.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   *||*||=*||||||||||||| targets:2888   UAGGUCUGCCAAACACUUCAC   2908 Target Full Sequence	3.0	PREDICTED: Zea mays diphthine--ammonia ligase (LOC103627881), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008648187.2	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   *||*||=*||||||||||||| targets:2880   UAGGUCUGCCAAACACUUCAC   2900 Target Full Sequence	3.0	PREDICTED: Zea mays diphthine--ammonia ligase (LOC103627881), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).