Search result

BaseInfo

ncRNA ID	zma-miR395b-5p
Species	Zea mays
Class	miRNA
Genome position	chr2:6332742-6332855 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	22
Mature sequence(if miRNA)	71 - GUUCCCUACAAGCACUUCACAA - 92
Stem-loop(if miRNA)	GCAAC    UG  U               A               ACCU     CAAUA      GUUU  UG UACUAGGAGUUCCCU CAAGCACUUCACAAU    UGGCU     A      ||||  || ||||||||||||||| |||||||||||||||    |||||      CGAA  AC AUGGUUCUCAAGGGG GUUUGUGAAGUGUUG    ACCGG     A -UUUA    GU  U               -               ----     AAAUU
Stem-loop sequence	GCAACGUUUUGUGUUACUAGGAGUUCCCUACAAGCACUUCACAAUACCUUGGCUCAAUAAAUUAAAGGCCAGUUGUGAAGUGUUUGGGGGAACUCUUGGUAUCAUGAAGCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552243.1	ncRNA:22   AACACUUCACGAACAUCCCUUG   1   |*||||||||||||*||||||= targets:318   UGGUGAAGUGCUUGGAGGGAAU   339 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC109945872), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).