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BaseInfo

ncRNA ID	zma-miR395f-5p
Species	Zea mays
Class	miRNA
Genome position	chr2:6322300-6322369 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	22
Mature sequence(if miRNA)	48 - GUUACCUACAAGCACGUCUCGA - 69
Stem-loop(if miRNA)	--    A  UA       G  U    ACCU      A   AGUU CC  CAAGCAC UC CGAU    UGGCUU A   |||| ||  ||||||| || ||||    |||||| U   UCAA GG  GUUUGUG AG GUUG    ACCGGA A UC    -  GG       A  U    ----      A
Stem-loop sequence	AGUUACCUACAAGCACGUCUCGAUACCUUGGCUUAAUAAAGGCCAGUUGUGAAGUGUUUGGGGGAACUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970935.1	ncRNA:22   AGCUCUGCACGAACAUCCAUUG   1   ||-|||=||||||*|||||||| targets:333   UC-AGAUGUGCUUAUAGGUAAC   353 Target Full Sequence	2.5	Zea mays clone 354276 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975384.1	ncRNA:22   AGCUCUGCACGAACAUCCAUUG   1   ||-|||=||||||*|||||||| targets:333   UC-AGAUGUGCUUAUAGGUAAC   353 Target Full Sequence	2.5	Zea mays clone 489280 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549733.1	ncRNA:22   AGCUCUGCACGAACAUCCAUUG   1   ||-|||=||||||*|||||||| targets:1213   UC-AGAUGUGCUUAUAGGUAAC   1233 Target Full Sequence	2.5	PREDICTED: Zea mays SC3 protein (si614044d02), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001155713.1	ncRNA:22   AGCUCUGCACGAACAUCCAUUG   1   ||-|||=||||||*|||||||| targets:1225   UC-AGAUGUGCUUAUAGGUAAC   1245 Target Full Sequence	2.5	Zea mays SC3 protein (si614044d02), mRNA	NA	coding protein	psRNATarget
EU962373.1	ncRNA:22   AGCUCUGCACGAACAUCCAUUG   1   ||-|||=||||||*|||||||| targets:1225   UC-AGAUGUGCUUAUAGGUAAC   1245 Target Full Sequence	2.5	Zea mays clone 242145 SC3 protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674662.2	ncRNA:22   AGCUCUGCACGAACAUCCAUUG   1   ||-|||=||||||*|||||||| targets:1262   UC-AGAUGUGCUUAUAGGUAAC   1282 Target Full Sequence	2.5	PREDICTED: Zea mays SC3 protein (si614044d02), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).