Search result

BaseInfo

ncRNA ID	zma-miR393c-3p
Species	Zea mays
Class	miRNA
Genome position	chr10:148715141-148715237 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	22
Mature sequence(if miRNA)	2 - GUCAGUGCAAUCCCUUUGGAAU - 23
Stem-loop(if miRNA)	--C           C        CUAAC    ---CGA   AC  -  -  G    UCCAAAGGGAU GCAUUGAU     CUGC      UCG  GC CG AC U    ||||||||||| ||||||||     ||||      |||  || || ||    AGGUUUCCCUA CGUGACUG     GACG      AGC  CG GC UG A UUA           A        -ACUA    AACAGG   -C  U  A  C
Stem-loop sequence	CUCCAAAGGGAUCGCAUUGAUCUAACCUGCCGAUCGACGCCGACGUACGUACGUGCCCGAGGACAAGCAGAUCAGUCAGUGCAAUCCCUUUGGAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235329.1	ncRNA:22   UAAGGUUUCCCUAACGUGACUG   1   |||||||||||||||||||||| targets:11   AUUCCAAAGGGAUUGCACUGAC   32 Target Full Sequence	0.0	Sequence 1324 from Patent EP2985353	NA	coding protein	psRNATarget
HI402916.1	ncRNA:22   UAAGGUUUCCCUAACGUGACUG   1   |||||||||||||||||||||| targets:11   AUUCCAAAGGGAUUGCACUGAC   32 Target Full Sequence	0.0	Sequence 1041 from Patent EP2074227	NA	coding protein	psRNATarget
HI403199.1	ncRNA:22   UAAGGUUUCCCUAACGUGACUG   1   |||||||||||||||||||||| targets:11   AUUCCAAAGGGAUUGCACUGAC   32 Target Full Sequence	0.0	Sequence 1324 from Patent EP2074227	NA	coding protein	psRNATarget
JB163377.1	ncRNA:22   UAAGGUUUCCCUAACGUGACUG   1   |||||||||||||||||||||| targets:11   AUUCCAAAGGGAUUGCACUGAC   32 Target Full Sequence	0.0	Sequence 1041 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235046.1	ncRNA:22   UAAGGUUUCCCUAACGUGACUG   1   |||||||||||||||||||||| targets:11   AUUCCAAAGGGAUUGCACUGAC   32 Target Full Sequence	0.0	Sequence 1041 from Patent EP2985353	NA	coding protein	psRNATarget
JB163660.1	ncRNA:22   UAAGGUUUCCCUAACGUGACUG   1   |||||||||||||||||||||| targets:11   AUUCCAAAGGGAUUGCACUGAC   32 Target Full Sequence	0.0	Sequence 1324 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).