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BaseInfo

ncRNA ID	zma-miR393c-5p
Species	Zea mays
Class	miRNA
Genome position	chr10:148715141-148715237 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	22
Mature sequence(if miRNA)	75 - UCCAAAGGGAUCGCAUUGAUCU - 96
Stem-loop(if miRNA)	--C           C        CUAAC    ---CGA   AC  -  -  G    UCCAAAGGGAU GCAUUGAU     CUGC      UCG  GC CG AC U    ||||||||||| ||||||||     ||||      |||  || || ||    AGGUUUCCCUA CGUGACUG     GACG      AGC  CG GC UG A UUA           A        -ACUA    AACAGG   -C  U  A  C
Stem-loop sequence	CUCCAAAGGGAUCGCAUUGAUCUAACCUGCCGAUCGACGCCGACGUACGUACGUGCCCGAGGACAAGCAGAUCAGUCAGUGCAAUCCCUUUGGAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163660.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   |||||||||||||||||||||| targets:84   AGAUCAAUGCGAUCCCUUUGGA   105 Target Full Sequence	0.0	Sequence 1324 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235329.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   |||||||||||||||||||||| targets:84   AGAUCAAUGCGAUCCCUUUGGA   105 Target Full Sequence	0.0	Sequence 1324 from Patent EP2985353	NA	coding protein	psRNATarget
HI402916.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   |||||||||||||||||||||| targets:84   AGAUCAAUGCGAUCCCUUUGGA   105 Target Full Sequence	0.0	Sequence 1041 from Patent EP2074227	NA	coding protein	psRNATarget
HI403199.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   |||||||||||||||||||||| targets:84   AGAUCAAUGCGAUCCCUUUGGA   105 Target Full Sequence	0.0	Sequence 1324 from Patent EP2074227	NA	coding protein	psRNATarget
JB163377.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   |||||||||||||||||||||| targets:84   AGAUCAAUGCGAUCCCUUUGGA   105 Target Full Sequence	0.0	Sequence 1041 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235046.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   |||||||||||||||||||||| targets:84   AGAUCAAUGCGAUCCCUUUGGA   105 Target Full Sequence	0.0	Sequence 1041 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235201.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   ||||||=|||*||||||||||| targets:75   AGAUCAGUGCAAUCCCUUUGGA   96 Target Full Sequence	2.5	Sequence 1196 from Patent EP2985353	NA	coding protein	psRNATarget
JB163532.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   ||||||=|||*||||||||||| targets:75   AGAUCAGUGCAAUCCCUUUGGA   96 Target Full Sequence	2.5	Sequence 1196 from Patent EP2559767	NA	coding protein	psRNATarget
HI403071.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   ||||||=|||*||||||||||| targets:75   AGAUCAGUGCAAUCCCUUUGGA   96 Target Full Sequence	2.5	Sequence 1196 from Patent EP2074227	NA	coding protein	psRNATarget
JB163820.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   ||||||=|||*||||||||||| targets:75   AGAUCAGUGCAAUCCCUUUGGA   96 Target Full Sequence	2.5	Sequence 1484 from Patent EP2559767	NA	coding protein	psRNATarget
HI403359.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   ||||||=|||*||||||||||| targets:75   AGAUCAGUGCAAUCCCUUUGGA   96 Target Full Sequence	2.5	Sequence 1484 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235489.1	ncRNA:22   UCUAGUUACGCUAGGGAAACCU   1   ||||||=|||*||||||||||| targets:75   AGAUCAGUGCAAUCCCUUUGGA   96 Target Full Sequence	2.5	Sequence 1484 from Patent EP2985353	NA	coding protein	psRNATarget
BT017377.1	ncRNA:19   AGUUACGCUAGGGAAACCU   1   *|||||||||||||||||| targets:1   ACAAUGCGAUCCCUUUGGA   19 Target Full Sequence	1.0	Zea mays clone EL01N0325G08.c mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).