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BaseInfo

ncRNA ID zma-miR396d
Species Zea mays
Class miRNA
Genome position chr10:147902552-147902625 [+]
Reference genome RefGen_v2
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - UUCCACAGGCUUUCUUGAACUG - 32
Stem-loop(if miRNA) ---- G     --  UUU    AG   UU  UGAA UG  A
    C GGCAU  GC   CCAC  GCU  CU    C  UG A
    | |||||  ||   ||||  |||  ||    |  ||
    G UCGUG  CG   GGUG  UGG  GG    G  GC C
UGUG G     GU  --U    -G   -U  UGCG GU  U
Stem-loop sequence CGGGCAUGCUUUCCACAGGCUUUCUUGAACUGUGAACUCGUGGGCGUGGUGGUGGUGGUGCUGGUGCUGGGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI410047.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  ||||||||||||||||||||||
targets:213   CAGUUCAAGAAAGCCUGUGGAA   234

0.0 Sequence 8172 from Patent EP2074227 NA coding protein psRNATarget
JB163785.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  ||||||||||||||||||||||
targets:213   CAGUUCAAGAAAGCCUGUGGAA   234

0.0 Sequence 1449 from Patent EP2559767 NA coding protein psRNATarget
JB170508.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  ||||||||||||||||||||||
targets:213   CAGUUCAAGAAAGCCUGUGGAA   234

0.0 Sequence 8172 from Patent EP2559767 NA coding protein psRNATarget
HI403324.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  ||||||||||||||||||||||
targets:213   CAGUUCAAGAAAGCCUGUGGAA   234

0.0 Sequence 1449 from Patent EP2074227 NA coding protein psRNATarget
LQ235454.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  ||||||||||||||||||||||
targets:213   CAGUUCAAGAAAGCCUGUGGAA   234

0.0 Sequence 1449 from Patent EP2985353 NA coding protein psRNATarget
LQ242177.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  ||||||||||||||||||||||
targets:213   CAGUUCAAGAAAGCCUGUGGAA   234

0.0 Sequence 8172 from Patent EP2985353 NA coding protein psRNATarget
HI410215.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:6   CACCGUUCAAGAAAGCCUGUGGAA   29

0.0 Sequence 8340 from Patent EP2074227 NA coding protein psRNATarget
JB170676.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:6   CACCGUUCAAGAAAGCCUGUGGAA   29

0.0 Sequence 8340 from Patent EP2559767 NA coding protein psRNATarget
LQ242345.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:6   CACCGUUCAAGAAAGCCUGUGGAA   29

0.0 Sequence 8340 from Patent EP2985353 NA coding protein psRNATarget
KJ728234.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:46   CACCGUUCAAGAAAGCCUGUGGAA   69

0.0 Zea mays clone pUT6511 orphans transcription factor (Orphan160) mRNA, partial cds NA coding protein psRNATarget
HQ858746.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:577   CACCGUUCAAGAAAGCCUGUGGAA   600

0.0 Zea mays clone UT1444 GRF transcription factor mRNA, partial cds NA coding protein psRNATarget
EF515852.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:615   CACCGUUCAAGAAAGCCUGUGGAA   638

0.0 Zea mays putative growth-regulating factor 13 (GRF13) mRNA, complete cds NA coding protein psRNATarget
NM_001112574.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:615   CACCGUUCAAGAAAGCCUGUGGAA   638

0.0 Zea mays uncharacterized LOC100125643 (pco092050), mRNA NA coding protein psRNATarget
EF515847.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:638   CACCGUUCAAGAAAGCCUGUGGAA   661

0.0 Zea mays putative growth-regulating factor 8 (GRF8) mRNA, complete cds NA coding protein psRNATarget
NM_001112556.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:638   CACCGUUCAAGAAAGCCUGUGGAA   661

0.0 Zea mays uncharacterized LOC100101540 (cl53605_1), mRNA NA coding protein psRNATarget
BT060560.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:631   CACCGUUCAAGAAAGCCUGUGGAA   654

0.0 Zea mays full-length cDNA clone ZM_BFb0016D14 mRNA, complete cds NA coding protein psRNATarget
EU961032.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:649   CAACGUUCAAGAAAGCCUGUGGAA   672

0.0 Zea mays clone 230596 atGRF2 mRNA, complete cds NA coding protein psRNATarget
BT085071.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:742   CACCGUUCAAGAAAGCCUGUGGAA   765

0.0 Zea mays full-length cDNA clone ZM_BFb0279J23 mRNA, complete cds NA coding protein psRNATarget
EU962001.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||||||||||
targets:728   CACCGUUCAAGAAAGCCUGUGGAA   751

0.0 Zea mays clone 239561 atGRF2 mRNA, complete cds NA coding protein psRNATarget
XM_008682358.1
ncRNA:22   GU---CAAGUUCUUUCGGACACCUU   1
  ||---||||||||||||||||||||
targets:228   CAAGCGUUCAAGAAAGCCUGUGGAA   252

0.0 PREDICTED: Zea mays growth-regulating factor 4-like (LOC103655637), mRNA NA coding protein psRNATarget
KJ727857.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:513   CCGUUCAAGAAAGCCUGUGGAA   534

0.0 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds NA coding protein psRNATarget
KJ728235.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:18   CCGUUCAAGAAAGCCUGUGGAA   39

0.0 Zea mays clone pUT6512 orphans transcription factor (Orphan12) mRNA, partial cds NA coding protein psRNATarget
NM_001159135.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:556   CCGUUCAAGAAAGCCUGUGGAA   577

0.0 Zea mays growth-regulating factor (GRF9), transcript variant 1, mRNA NA coding protein psRNATarget
EU976393.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:556   CCGUUCAAGAAAGCCUGUGGAA   577

0.0 Zea mays clone 881905 growth-regulating factor mRNA, complete cds NA coding protein psRNATarget
NM_001347197.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:629   CCGUUCAAGAAAGCCUGUGGAA   650

0.0 Zea mays growth-regulating factor (GRF9), transcript variant 2, mRNA NA coding protein psRNATarget
JX469985.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:363   CCGUUCAAGAAAGCCUGUGGAA   384

0.0 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds NA coding protein psRNATarget
BT087407.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:9   CCGUUCAAGAAAGCCUGUGGAA   30

0.0 Zea mays full-length cDNA clone ZM_BFb0063M22 mRNA, complete cds NA coding protein psRNATarget
BT055535.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:9   CCGUUCAAGAAAGCCUGUGGAA   30

0.0 Zea mays full-length cDNA clone ZM_BFc0060C15 mRNA, complete cds NA coding protein psRNATarget
EU965972.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:606   CCGUUCAAGAAAGCCUGUGGAA   627

0.0 Zea mays clone 290465 mRNA sequence NA coding protein psRNATarget
NM_001112573.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:483   CCGUUCAAGAAAGCCUGUGGAA   504

0.0 Zea mays uncharacterized LOC100125642 (si606013h03), mRNA NA coding protein psRNATarget
EF515851.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:483   CCGUUCAAGAAAGCCUGUGGAA   504

0.0 Zea mays putative growth-regulating factor 12 (GRF12) mRNA, complete cds NA coding protein psRNATarget
KJ726833.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:411   CCGUUCAAGAAAGCCUGUGGAA   432

0.0 Zea mays clone pUT3373 GRF transcription factor (GRF7) mRNA, partial cds NA coding protein psRNATarget
KJ727858.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:435   CCGUUCAAGAAAGCCUGUGGAA   456

0.0 Zea mays clone pUT5949 GRF transcription factor (GRF5) mRNA, partial cds NA coding protein psRNATarget
EF515848.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:422   CCGUUCAAGAAAGCCUGUGGAA   443

0.0 Zea mays putative growth-regulating factor 9 (GRF9) mRNA, complete cds NA coding protein psRNATarget
NM_001112557.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:422   CCGUUCAAGAAAGCCUGUGGAA   443

0.0 Zea mays growth-regulating factor 1-like (LOC103627811), mRNA NA coding protein psRNATarget
EF515846.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:417   CCGUUCAAGAAAGCCUGUGGAA   438

0.0 Zea mays putative growth-regulating factor 7 (GRF7) mRNA, complete cds NA coding protein psRNATarget
EF515845.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:455   CCGUUCAAGAAAGCCUGUGGAA   476

0.0 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds NA coding protein psRNATarget
KJ727972.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:468   CCGUUCAAGAAAGCCUGUGGAA   489

0.0 Zea mays clone pUT6086 GRF transcription factor (GRF6) mRNA, partial cds NA coding protein psRNATarget
KX494923.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:468   CCGUUCAAGAAAGCCUGUGGAA   489

0.0 Zea mays cultivar inbred line HKI-335 angustifolia 3 (AN3) mRNA, complete cds NA coding protein psRNATarget
XM_008647832.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:854   CCGUUCAAGAAAGCCUGUGGAA   875

0.0 PREDICTED: Zea mays growth-regulating factor 10 (LOC103627547), mRNA NA coding protein psRNATarget
BT041540.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:394   CCGUUCAAGAAAGCCUGUGGAA   415

0.0 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds NA coding protein psRNATarget
XM_020544839.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:587   CCGUUCAAGAAAGCCUGUGGAA   608

0.0 PREDICTED: Zea mays growth-regulating factor 5-like (GRF5), transcript variant X1, mRNA NA coding protein psRNATarget
BT036988.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:572   CCGUUCAAGAAAGCCUGUGGAA   593

0.0 Zea mays full-length cDNA clone ZM_BFb0150I14 mRNA, complete cds NA coding protein psRNATarget
BT036806.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:514   CCGUUCAAGAAAGCCUGUGGAA   535

0.0 Zea mays full-length cDNA clone ZM_BFb0139L07 mRNA, complete cds NA coding protein psRNATarget
BT055390.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:408   CCGUUCAAGAAAGCCUGUGGAA   429

0.0 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds NA coding protein psRNATarget
BT068133.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:322   CCGUUCAAGAAAGCCUGUGGAA   343

0.0 Zea mays full-length cDNA clone ZM_BFb0070G01 mRNA, complete cds NA coding protein psRNATarget
BT042154.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:337   CCGUUCAAGAAAGCCUGUGGAA   358

0.0 Zea mays full-length cDNA clone ZM_BFb0147L11 mRNA, complete cds NA coding protein psRNATarget
BT066926.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:339   CCGUUCAAGAAAGCCUGUGGAA   360

0.0 Zea mays full-length cDNA clone ZM_BFb0106E18 mRNA, complete cds NA coding protein psRNATarget
EF515842.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:483   CCGUUCAAGAAAGCCUGUGGAA   504

0.0 Zea mays putative growth-regulating factor 3 (GRF3) mRNA, complete cds NA coding protein psRNATarget
EF515850.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:516   CCGUUCAAGAAAGCCUGUGGAA   537

0.0 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds NA coding protein psRNATarget
NM_001112559.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:516   CCGUUCAAGAAAGCCUGUGGAA   537

0.0 Zea mays uncharacterized LOC100101543 (TIDP3466), mRNA NA coding protein psRNATarget
EF515844.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:504   CCGUUCAAGAAAGCCUGUGGAA   525

0.0 Zea mays putative growth-regulating factor 5 (GRF5) mRNA, complete cds NA coding protein psRNATarget
NM_001112554.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:504   CCGUUCAAGAAAGCCUGUGGAA   525

0.0 Zea mays growth-regulating factor 5-like (GRF5), mRNA NA coding protein psRNATarget
EF515840.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:479   CCGUUCAAGAAAGCCUGUGGAA   500

0.0 Zea mays putative growth-regulating factor 1 (GRF1) mRNA, complete cds NA coding protein psRNATarget
NM_001112551.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:479   CCGUUCAAGAAAGCCUGUGGAA   500

0.0 Zea mays growth-regulating factor 1-like (GRF1), mRNA NA coding protein psRNATarget
BT087442.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:363   CCGUUCAAGAAAGCCUGUGGAA   384

0.0 Zea mays full-length cDNA clone ZM_BFb0078A11 mRNA, complete cds NA coding protein psRNATarget
BT034695.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:554   CCGUUCAAGAAAGCCUGUGGAA   575

0.0 Zea mays full-length cDNA clone ZM_BFb0011O13 mRNA, complete cds NA coding protein psRNATarget
XM_008649041.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:716   CCGUUCAAGAAAGCCUGUGGAA   737

0.0 PREDICTED: Zea mays growth-regulating factor 7-like (GRF7), transcript variant X1, mRNA NA coding protein psRNATarget
EU964433.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:477   CCGUUCAAGAAAGCCUGUGGAA   498

0.0 Zea mays clone 278895 atGRF5 mRNA, complete cds NA coding protein psRNATarget
EF515853.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:566   CCGUUCAAGAAAGCCUGUGGAA   587

0.0 Zea mays putative growth-regulating factor 14 (GRF14) mRNA, complete cds NA coding protein psRNATarget
NM_001112575.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:566   CCGUUCAAGAAAGCCUGUGGAA   587

0.0 Zea mays Growth-regulating factor 6 (cl52038_1), mRNA NA coding protein psRNATarget
BT035875.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:470   CCGUUCAAGAAAGCCUGUGGAA   491

0.0 Zea mays full-length cDNA clone ZM_BFb0086L11 mRNA, complete cds NA coding protein psRNATarget
BT040071.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:394   CCGUUCAAGAAAGCCUGUGGAA   415

0.0 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds NA coding protein psRNATarget
EU970339.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:495   CCGUUCAAGAAAGCCUGUGGAA   516

0.0 Zea mays clone 343480 atGRF5 mRNA, complete cds NA coding protein psRNATarget
BT054834.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:518   CCGUUCAAGAAAGCCUGUGGAA   539

0.0 Zea mays full-length cDNA clone ZM_BFb0084L18 mRNA, complete cds NA coding protein psRNATarget
EU962787.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:581   CCGUUCAAGAAAGCCUGUGGAA   602

0.0 Zea mays clone 245531 growth-regulating factor mRNA, complete cds NA coding protein psRNATarget
EU974389.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:537   CCGUUCAAGAAAGCCUGUGGAA   558

0.0 Zea mays clone 447954 growth-regulating factor mRNA, complete cds NA coding protein psRNATarget
EU970292.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:451   CCGUUCAAGAAAGCCUGUGGAA   472

0.0 Zea mays clone 343148 atGRF5 mRNA, complete cds NA coding protein psRNATarget
NM_001112572.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:609   CCGUUCAAGAAAGCCUGUGGAA   630

0.0 Zea mays growth-regulating factor 7-like (GRF7), mRNA NA coding protein psRNATarget
BT034919.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:609   CCGUUCAAGAAAGCCUGUGGAA   630

0.0 Zea mays full-length cDNA clone ZM_BFb0028B17 mRNA, complete cds NA coding protein psRNATarget
BT061073.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:611   CCGUUCAAGAAAGCCUGUGGAA   632

0.0 Zea mays full-length cDNA clone ZM_BFb0094H04 mRNA, complete cds NA coding protein psRNATarget
EU964039.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:627   CCGUUCAAGAAAGCCUGUGGAA   648

0.0 Zea mays clone 275395 growth-regulating factor mRNA, complete cds NA coding protein psRNATarget
NM_001112555.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:693   CCGUUCAAGAAAGCCUGUGGAA   714

0.0 Zea mays growth-regulating factor 6-like (GRF6), mRNA NA coding protein psRNATarget
XM_008649043.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:638   CCGUUCAAGAAAGCCUGUGGAA   659

0.0 PREDICTED: Zea mays Growth-regulating factor 6 (cl52038_1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649042.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:638   CCGUUCAAGAAAGCCUGUGGAA   659

0.0 PREDICTED: Zea mays Growth-regulating factor 6 (cl52038_1), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001112552.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:578   CCGUUCAAGAAAGCCUGUGGAA   599

0.0 Zea mays growth-regulating factor 3-like (GRF3), mRNA NA coding protein psRNATarget
BT041560.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:666   CCGUUCAAGAAAGCCUGUGGAA   687

0.0 Zea mays full-length cDNA clone ZM_BFb0003P14 mRNA, complete cds NA coding protein psRNATarget
XM_020538714.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:526   CCGUUCAAGAAAGCCUGUGGAA   547

0.0 PREDICTED: Zea mays growth-regulating factor 1-like (LOC103627811), mRNA NA coding protein psRNATarget
XM_008678196.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:598   CCGUUCAAGAAAGCCUGUGGAA   619

0.0 PREDICTED: Zea mays growth-regulating factor 3-like (GRF3), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543439.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:582   CCGUUCAAGAAAGCCUGUGGAA   603

0.0 PREDICTED: Zea mays uncharacterized LOC100125642 (si606013h03), transcript variant X1, mRNA NA coding protein psRNATarget
BT067144.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:1389   CCGUUCAAGAAAGCCUGUGGAA   1410

0.0 Zea mays full-length cDNA clone ZM_BFb0209I17 mRNA, complete cds NA coding protein psRNATarget
BT038848.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:837   CCGUUCAAGAAAGCCUGUGGAA   858

0.0 Zea mays full-length cDNA clone ZM_BFb0336F11 mRNA, complete cds NA coding protein psRNATarget
XM_008682709.2
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:790   CCGUUCAAGAAAGCCUGUGGAA   811

0.0 PREDICTED: Zea mays growth-regulating factor 1-like (GRF1), transcript variant X1, mRNA NA coding protein psRNATarget
BT061598.1
ncRNA:22   GUCAAGUUCUUUCGGACACCUU   1
  |*||||||||||||||||||||
targets:1135   CCGUUCAAGAAAGCCUGUGGAA   1156

0.0 Zea mays full-length cDNA clone ZM_BFb0163E16 mRNA, complete cds NA coding protein psRNATarget
AY107388.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:148   CACCGUUCAAGAAAGCAUGUGGAA   171

1.5 Zea mays PCO080442 mRNA sequence NA coding protein psRNATarget
KJ726830.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:487   CACCGUUCAAGAAAGCAUGUGGAA   510

1.5 Zea mays clone pUT3370 GRF transcription factor (GRF15) mRNA, partial cds NA coding protein psRNATarget
DQ245752.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:406   CACCGUUCAAGAAAGCAUGUGGAA   429

1.5 Zea mays clone 20094 mRNA sequence NA coding protein psRNATarget
JX469986.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:337   CAUCGUUCAAGAAAGCAUGUGGAA   360

1.5 Zea mays subsp. mays clone UT3346 GRF-type transcription factor mRNA, partial cds NA coding protein psRNATarget
BT068366.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:229   CAUCGUUCAAGAAAGCAUGUGGAA   252

1.5 Zea mays full-length cDNA clone ZM_BFb0137L20 mRNA, complete cds NA coding protein psRNATarget
BT068099.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:525   CACCGUUCAAGAAAGCAUGUGGAA   548

1.5 Zea mays full-length cDNA clone ZM_BFb0053A15 mRNA, complete cds NA coding protein psRNATarget
BT088016.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:179   CAUCGUUCAAGAAAGCAUGUGGAA   202

1.5 Zea mays full-length cDNA clone ZM_BFb0357C16 mRNA, complete cds NA coding protein psRNATarget
BT061281.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:394   CACCGUUCAAGAAAGCAUGUGGAA   417

1.5 Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds NA coding protein psRNATarget
NM_001112571.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:647   CACCGUUCAAGAAAGCAUGUGGAA   670

1.5 Zea mays uncharacterized LOC100125640 (pco080442), mRNA NA coding protein psRNATarget
EF515841.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:647   CACCGUUCAAGAAAGCAUGUGGAA   670

1.5 Zea mays putative growth-regulating factor 2 (GRF2) mRNA, complete cds NA coding protein psRNATarget
BT068700.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:688   CACCGUUCAAGAAAGCAUGUGGAA   711

1.5 Zea mays full-length cDNA clone ZM_BFb0375O24 mRNA, complete cds NA coding protein psRNATarget
EU954645.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:646   CACCGUUCAAGAAAGCAUGUGGAA   669

1.5 Zea mays clone 1475381 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT064538.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:328   CAUCGUUCAAGAAAGCAUGUGGAA   351

1.5 Zea mays full-length cDNA clone ZM_BFc0179B15 mRNA, complete cds NA coding protein psRNATarget
XM_008668764.2
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:733   CACCGUUCAAGAAAGCAUGUGGAA   756

1.5 PREDICTED: Zea mays uncharacterized LOC100125640 (pco080442), transcript variant X1, mRNA NA coding protein psRNATarget
BT063759.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:544   CAUCGUUCAAGAAAGCAUGUGGAA   567

1.5 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds NA coding protein psRNATarget
EU969909.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:480   CAUCGUUCAAGAAAGCAUGUGGAA   503

1.5 Zea mays clone 337118 growth-regulating factor 1 mRNA, complete cds NA coding protein psRNATarget
KJ726877.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:745   CAUCGUUCAAGAAAGCAUGUGGAA   768

1.5 Zea mays clone pUT3418 GRF transcription factor (GRF1) mRNA, partial cds NA coding protein psRNATarget
BT064035.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:22   CAUCGUUCAAGAAAGCAUGUGGAA   45

1.5 Zea mays full-length cDNA clone ZM_BFc0133B23 mRNA, complete cds NA coding protein psRNATarget
BT085734.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:731   CAUCGUUCAAGAAAGCAUGUGGAA   754

1.5 Zea mays full-length cDNA clone ZM_BFc0052P13 mRNA, complete cds NA coding protein psRNATarget
EU960738.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:442   CACCGUUCAAGAAAGCAUGUGGAA   465

1.5 Zea mays clone 228113 mRNA sequence NA coding protein psRNATarget
NM_001350754.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:857   CAUCGUUCAAGAAAGCAUGUGGAA   880

1.5 Zea mays uncharacterized LOC100191470 (TIDP3664), mRNA NA coding protein psRNATarget
EU973647.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:906   CAUCGUUCAAGAAAGCAUGUGGAA   929

1.5 Zea mays clone 403513 growth-regulating factor 1 mRNA, complete cds NA coding protein psRNATarget
NM_001158625.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:935   CAUCGUUCAAGAAAGCAUGUGGAA   958

1.5 Zea mays Growth-regulating factor 2 (cl3497_1), mRNA NA coding protein psRNATarget
BT067085.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:935   CAUCGUUCAAGAAAGCAUGUGGAA   958

1.5 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds NA coding protein psRNATarget
BT033562.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:1041   CAUCGUUCAAGAAAGCAUGUGGAA   1064

1.5 Zea mays full-length cDNA clone ZM_BFb0055D20 mRNA, complete cds NA coding protein psRNATarget
XM_020553316.1
ncRNA:22   GU--CAAGUUCUUUCGGACACCUU   1
  ||--||||||||||||*|||||||
targets:1266   CAUCGUUCAAGAAAGCAUGUGGAA   1289

1.5 PREDICTED: Zea mays Growth-regulating factor 2 (cl3497_1), transcript variant X1, mRNA NA coding protein psRNATarget

Reference

1 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).
2 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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