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BaseInfo

ncRNA ID	zma-miR395o-3p
Species	Zea mays
Class	miRNA
Genome position	chr10:144744547-144744772 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	205 - GUGAAGUGUUUGGGUGAACUC - 225
Stem-loop(if miRNA)	--     U  U              -   AUCACACUGA   CUUUUGUGAAGUGUUUGGGGGAACUCUUGGUGUCACAAAUCAUUUGCAUUUGCUUGAUGUUAGUCAUGCACCAUGU   AGUUC CU CAAGCACUUCACGA GGC          GAG                                                                            G   ||||| || |||||||||||||| |||          |||                                                                            A   UCAAG GG GUUUGUGAAGUGUU CCG          GAA                                                                            U UC     U  -              A   ---------G   AUAAUUCAGUUCCAGAGUACUUCACGAACAUCCCUUGAGGAUCAUUGUGUUUUGCAACGGUACAGGAAAUAGAGUA
Stem-loop sequence	AGUUCUCUUCAAGCACUUCACGAGGCAUCACACUGAGAGCUUUUGUGAAGUGUUUGGGGGAACUCUUGGUGUCACAAAUCAUUUGCAUUUGCUUGAUGUUAGUCAUGCACCAUGUGAUAUGAGAUAAAGGACAUGGCAACGUUUUGUGUUACUAGGAGUUCCCUACAAGCACUUCAUGAGACCUUGACUUAAUAAAGGGCCAUUGUGAAGUGUUUGGGUGAACUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF016305.1	ncRNA:21   CUCAAGUGGGUUUGUGAAGUG   1   ||||||*=||||||||||||| targets:455   GAGUUCCUCCAAACACUUCAC   475 Target Full Sequence	2.0	Zea mays ATP sulfurylase mRNA, complete cds	NA	coding protein	psRNATarget
AY109520.1	ncRNA:21   CUCAAGUGGGUUUGUGAAGUG   1   ||||||*=||||||||||||| targets:455   GAGUUCCUCCAAACACUUCAC   475 Target Full Sequence	2.0	Zea mays CL30_1 mRNA sequence	NA	coding protein	psRNATarget
EU973074.1	ncRNA:21   CUCAAGUGGGUUUGUGAAGUG   1   ||||||*=||||||||||||= targets:418   GAGUUCCUCCAAACACUUCAU   438 Target Full Sequence	3.0	Zea mays clone 392860 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase mRNA, complete cds	NA	coding protein	psRNATarget
BT063912.1	ncRNA:21   CUCAAGUGGGUUUGUGAAGUG   1   ||||||*=||||||||||||= targets:426   GAGUUCCUCCAAACACUUCAU   446 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0119G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301511.1	ncRNA:21   CUCAAGUGGGUUUGUGAAGUG   1   ||||||*=||||||||||||= targets:426   GAGUUCCUCCAAACACUUCAU   446 Target Full Sequence	3.0	Zea mays ATP-sulfurylase 3, chloroplastic-like (LOC103643994), mRNA	NA	coding protein	psRNATarget
NM_001309873.1	ncRNA:21   CUCAAGUGGGUUUGUGAAGUG   1   |||||=*|||||||||||||= targets:353   GAGUUUCCCCAAACACUUCAU   373 Target Full Sequence	3.0	Zea mays Sulfate transporter 2.2 (gpm291), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).