| ncRNA ID | zma-miR395o-5p |
| Species | Zea mays |
| Class | miRNA |
| Genome position | chr10:144744547-144744772 [+] |
| Reference genome | RefGen_v2 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 2 - GUUCUCUUCAAGCACUUCACGA - 23 |
| Stem-loop(if miRNA) |
-- U U - AUCACACUGA CUUUUGUGAAGUGUUUGGGGGAACUCUUGGUGUCACAAAUCAUUUGCAUUUGCUUGAUGUUAGUCAUGCACCAUGU AGUUC CU CAAGCACUUCACGA GGC GAG G ||||| || |||||||||||||| ||| ||| A UCAAG GG GUUUGUGAAGUGUU CCG GAA U UC U - A ---------G AUAAUUCAGUUCCAGAGUACUUCACGAACAUCCCUUGAGGAUCAUUGUGUUUUGCAACGGUACAGGAAAUAGAGUA |
| Stem-loop sequence | AGUUCUCUUCAAGCACUUCACGAGGCAUCACACUGAGAGCUUUUGUGAAGUGUUUGGGGGAACUCUUGGUGUCACAAAUCAUUUGCAUUUGCUUGAUGUUAGUCAUGCACCAUGUGAUAUGAGAUAAAGGACAUGGCAACGUUUUGUGUUACUAGGAGUUCCCUACAAGCACUUCAUGAGACCUUGACUUAAUAAAGGGCCAUUGUGAAGUGUUUGGGUGAACUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BT041670.1 |
|
3.0 | Zea mays full-length cDNA clone ZM_BFb0029G04 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BT033341.1 |
|
3.0 | Zea mays full-length cDNA clone ZM_BFb0032G03 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001136727.1 |
|
3.0 | Zea mays Pentatricopeptide repeat-containing protein (LOC100191293), mRNA | NA | coding protein | psRNATarget | |||||||||
| EU959627.1 |
|
3.0 | Zea mays clone 218938 hypothetical protein mRNA, complete cds | NA | coding protein | psRNATarget |
| 1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |