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BaseInfo

ncRNA ID zma-miR171b-5p
Species Zea mays
Class miRNA
Genome position chr10:142971155-142971239 [+]
Reference genome RefGen_v2
Source miRBase
Length 20
Mature sequence(if miRNA) 4 - GAUAUUGGCGCGGUUCAAUC - 23
Stem-loop(if miRNA)   G                       A  CUU C     AGG
CG GAUAUUGGCGCGGUUCAAUCAGA AG   G GCUCC   C
|| ||||||||||||||||||||||| ||   | |||||
GC CUAUAACCGUGCCGAGUUAGUUU UC   C CGGGG   C
  A                       C  -AC U     AGC
Stem-loop sequence CGGGAUAUUGGCGCGGUUCAAUCAGAAAGCUUGCGCUCCAGGCCCGAGGGGCUCCACUCUUUGAUUGAGCCGUGCCAAUAUCACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235141.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||||||||||
targets:89   GAUUGAGCCGCGCCAAUAUC   108

1.0 Sequence 1136 from Patent EP2985353 NA coding protein psRNATarget
JB163472.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||||||||||
targets:89   GAUUGAGCCGCGCCAAUAUC   108

1.0 Sequence 1136 from Patent EP2559767 NA coding protein psRNATarget
HI403011.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||||||||||
targets:89   GAUUGAGCCGCGCCAAUAUC   108

1.0 Sequence 1136 from Patent EP2074227 NA coding protein psRNATarget
HI408560.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:72   GAUUGAGCCGUGCCAAUAUC   91

2.5 Sequence 6685 from Patent EP2074227 NA coding protein psRNATarget
LQ240690.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:72   GAUUGAGCCGUGCCAAUAUC   91

2.5 Sequence 6685 from Patent EP2985353 NA coding protein psRNATarget
JB169021.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:72   GAUUGAGCCGUGCCAAUAUC   91

2.5 Sequence 6685 from Patent EP2559767 NA coding protein psRNATarget
LQ235542.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1537 from Patent EP2985353 NA coding protein psRNATarget
LQ235240.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1235 from Patent EP2985353 NA coding protein psRNATarget
LQ235284.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1279 from Patent EP2985353 NA coding protein psRNATarget
HI403412.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1537 from Patent EP2074227 NA coding protein psRNATarget
HI403154.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1279 from Patent EP2074227 NA coding protein psRNATarget
JB163926.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1590 from Patent EP2559767 NA coding protein psRNATarget
LQ235285.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1280 from Patent EP2985353 NA coding protein psRNATarget
HI403470.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1595 from Patent EP2074227 NA coding protein psRNATarget
JB163615.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1279 from Patent EP2559767 NA coding protein psRNATarget
JB163621.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1285 from Patent EP2559767 NA coding protein psRNATarget
HI403465.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1590 from Patent EP2074227 NA coding protein psRNATarget
JB163873.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1537 from Patent EP2559767 NA coding protein psRNATarget
JB163571.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1235 from Patent EP2559767 NA coding protein psRNATarget
LQ235594.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1589 from Patent EP2985353 NA coding protein psRNATarget
LQ235290.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1285 from Patent EP2985353 NA coding protein psRNATarget
JB163616.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1280 from Patent EP2559767 NA coding protein psRNATarget
JB163925.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1589 from Patent EP2559767 NA coding protein psRNATarget
JB163931.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1595 from Patent EP2559767 NA coding protein psRNATarget
HI403155.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1280 from Patent EP2074227 NA coding protein psRNATarget
HI403160.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1285 from Patent EP2074227 NA coding protein psRNATarget
LQ235600.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1595 from Patent EP2985353 NA coding protein psRNATarget
HI403464.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1589 from Patent EP2074227 NA coding protein psRNATarget
HI403110.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1235 from Patent EP2074227 NA coding protein psRNATarget
LQ235595.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:77   GAUUGAGCCGUGCCAAUAUC   96

2.5 Sequence 1590 from Patent EP2985353 NA coding protein psRNATarget
JB167531.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||=|||||||
targets:76   GAUUGAGCCGCGUCAAUAUC   95

2.5 Sequence 5195 from Patent EP2559767 NA coding protein psRNATarget
LQ239200.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||=|||||||
targets:76   GAUUGAGCCGCGUCAAUAUC   95

2.5 Sequence 5195 from Patent EP2985353 NA coding protein psRNATarget
HI407070.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||=|||||||
targets:76   GAUUGAGCCGCGUCAAUAUC   95

2.5 Sequence 5195 from Patent EP2074227 NA coding protein psRNATarget
LQ241785.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:103   GAUUGAGCCGUGCCAAUAUC   122

2.5 Sequence 7780 from Patent EP2985353 NA coding protein psRNATarget
HI409655.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:103   GAUUGAGCCGUGCCAAUAUC   122

2.5 Sequence 7780 from Patent EP2074227 NA coding protein psRNATarget
JB170116.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:103   GAUUGAGCCGUGCCAAUAUC   122

2.5 Sequence 7780 from Patent EP2559767 NA coding protein psRNATarget
JA894755.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:116   GAUUGAGCCGUGCCAAUAUC   135

2.5 Sequence 72 from Patent WO2011067745 NA coding protein psRNATarget
EU946837.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:434   GAUUGAGCCGUGCCAAUAUC   453

2.5 Zea mays clone 324010 mRNA sequence NA coding protein psRNATarget
BT018211.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:222   GAUUGAGCCGUGCCAAUAUC   241

2.5 Zea mays clone EL01N0560G03.c mRNA sequence NA coding protein psRNATarget
EU950482.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||||=|||||||
targets:223   GAUUGAGCCGCGUCAAUAUC   242

2.5 Zea mays clone 494016 mRNA sequence NA coding protein psRNATarget
EU940714.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:284   GAUUGAGCCGUGCCAAUAUC   303

2.5 Zea mays clone 1060824 mRNA sequence NA coding protein psRNATarget
BT035609.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:546   GAUUGAGCCGUGCCAAUAUC   565

2.5 Zea mays full-length cDNA clone ZM_BFb0071O21 mRNA, complete cds NA coding protein psRNATarget
NM_001138495.1
ncRNA:20   CUAACUUGGCGCGGUUAUAG   1
  ||||||=|||=|||||||||
targets:546   GAUUGAGCCGUGCCAAUAUC   565

2.5 Zea mays uncharacterized LOC100193365 (LOC100193365), mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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