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BaseInfo

ncRNA ID ath-miRf10289-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 23
Mature sequence(if miRNA) NA - ACUCGGCCUGGGGGUCGAGUGAU - NA
Stem-loop(if miRNA) U   GG  A        AU      A       -A  GUCGAGUAGAG
 GAU  UG UACUCGAC  CCAGGU GAGUGAU  AG           G
 |||  || ||||||||  |||||| |||||||  ||           U
 CUA  GU GUGAGCUG  GGUCCG CUCACUG  GU           C
G   GU  A        GG      G       AA  AGGGUAACGGU
Stem-loop sequence UGAUGGUGAUACUCGACAUCCAGGUAGAGUGAUAAGGUCGAGUAGAGGUCUGGCAAUGGGAUGAAGUCACUCGGCCUGGGGGUCGAGUGAUGUGAUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT025674.1
ncRNA:23   UAG-UGAGCUGGGGGUCCGGCUCA   1
  |||-||||||||||||||=|||||
targets:185   AUCUACUCGACCCCCAGGUCGAGU   208

1.5 Arabidopsis thaliana NA coding protein psRNATarget
NM_103391.1
ncRNA:23   UAGUGAGCUGGGGGUCCGGCUCA   1
  |*|||||||||||||||=|||||
targets:1103   ACCACUCGACCCCCAGGUCGAGU   1125

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT014714.1
ncRNA:23   UAGUGAGCUGGGGGUCCGGCUCA   1
  ||-||||||||||||||=|||||
targets:136   AU-ACUCGACCCCCAGGUCGAGU   157

1.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:23   UAGUGAGCUGGGGGUCCGGCUCA   1
  ||-||||||||||||||=|||||
targets:136   AU-ACUCGACCCCCAGGUCGAGU   157

1.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget