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BaseInfo

ncRNA ID	zma-miR156h-5p
Species	Zea mays
Class	miRNA
Genome position	chr10:128528004-128528118 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	77 - UGACAGAAGAGAGUGAGCAC - 96
Stem-loop(if miRNA)	C       C  G  C    -        -   -         A     GGGC        A  GGGCUCG GC CG GCGG UGACAGAA GAG AGUGAGCAC CGGCC    GUGACGGC C  ||||||| || || |||| |||||||| ||| ||||||||| |||||    ||||||||  UCCGGGC UG GU CGCC ACUGUCUU CUC UCACUCGUG GCCGG    CGCUGCCG G C       C  -  -    U        U   G         C     ----        U
Stem-loop sequence	CGGGCUCGCGCGCGCGCGGUGACAGAAGAGAGUGAGCACACGGCCGGGCGUGACGGCACGUGCCGUCGCGGCCGCGUGCUCACUGCUCUUUCUGUCAUCCGCUGGUCCGGGCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240713.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||||||||||||||||| targets:74   GUGCUCACUCUCUUCUGUCA   93 Target Full Sequence	0.0	Sequence 6708 from Patent EP2985353	NA	coding protein	psRNATarget
HI408583.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||||||||||||||||| targets:74   GUGCUCACUCUCUUCUGUCA   93 Target Full Sequence	0.0	Sequence 6708 from Patent EP2074227	NA	coding protein	psRNATarget
JB169044.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   |||||||||||||||||||| targets:74   GUGCUCACUCUCUUCUGUCA   93 Target Full Sequence	0.0	Sequence 6708 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242046.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:74   GUGCUCACUCUCUAUCUGUCA   94 Target Full Sequence	3.0	Sequence 8041 from Patent EP2985353	NA	coding protein	psRNATarget
JB170378.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:74   GUGCUCACUCUCUAUCUGUCA   94 Target Full Sequence	3.0	Sequence 8042 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242047.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:74   GUGCUCACUCUCUAUCUGUCA   94 Target Full Sequence	3.0	Sequence 8042 from Patent EP2985353	NA	coding protein	psRNATarget
HI409916.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:74   GUGCUCACUCUCUAUCUGUCA   94 Target Full Sequence	3.0	Sequence 8041 from Patent EP2074227	NA	coding protein	psRNATarget
JB170377.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:74   GUGCUCACUCUCUAUCUGUCA   94 Target Full Sequence	3.0	Sequence 8041 from Patent EP2559767	NA	coding protein	psRNATarget
HI409917.1	ncRNA:20   CACGAGUGAGAGA-AGACAGU   1   |||||||||||||-||||||| targets:74   GUGCUCACUCUCUAUCUGUCA   94 Target Full Sequence	3.0	Sequence 8042 from Patent EP2074227	NA	coding protein	psRNATarget
EZ086842.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:43   GUGCUCUCUCUCUUCUGUCA   62 Target Full Sequence	1.0	TSA: Zea mays contig22488, mRNA sequence	NA	coding protein	psRNATarget
AY107331.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:127   GUGCUCUCUCUCUUCUGUCA   146 Target Full Sequence	1.0	Zea mays PCO114323 mRNA sequence	NA	coding protein	psRNATarget
JC611929.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:632   GUGCUCUCUCUCUUCUGUCA   651 Target Full Sequence	1.0	Sequence 91 from Patent WO2014106838	NA	coding protein	psRNATarget
XM_008682670.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:374   GUGCUCUCUCUCUUCUGUCA   393 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (LOC103656018), mRNA	NA	coding protein	psRNATarget
HQ858690.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:755   GUGCUCUCUCUCUUCUGUCA   774 Target Full Sequence	1.0	Zea mays clone UT1146 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
EU947023.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:284   GUGCUCUCUCUCUUCUGUCA   303 Target Full Sequence	1.0	Zea mays clone 326226 mRNA sequence	NA	coding protein	psRNATarget
HQ858679.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:764   GUGCUCUCUCUCUUCUGUCA   783 Target Full Sequence	1.0	Zea mays clone UT1135 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
KJ726823.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:779   GUGCUCUCUCUCUUCUGUCA   798 Target Full Sequence	1.0	Zea mays clone pUT3362 SBP transcription factor (SBP23) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001143577.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:591   GUGCUCUCUCUCUUCUGUCA   610 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100217221), mRNA	NA	coding protein	psRNATarget
BT038156.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:591   GUGCUCUCUCUCUUCUGUCA   610 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0214P19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065275.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:907   GUGCUCUCUCUCUUCUGUCA   926 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0077F03 mRNA, complete cds	NA	coding protein	psRNATarget
HQ858696.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:632   GUGCUCUCUCUCUUCUGUCA   651 Target Full Sequence	1.0	Zea mays clone UT1152 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
KJ726820.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:812   GUGCUCUCUCUCUUCUGUCA   831 Target Full Sequence	1.0	Zea mays clone pUT3359 SBP transcription factor (SBP8) mRNA, partial cds	NA	coding protein	psRNATarget
AJ011619.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:559   GUGCUCUCUCUCUUCUGUCA   578 Target Full Sequence	1.0	Zea mays mRNA for SBP-domain protein 6, partial	NA	coding protein	psRNATarget
EU970791.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:587   GUGCUCUCUCUCUUCUGUCA   606 Target Full Sequence	1.0	Zea mays clone 350913 mRNA sequence	NA	coding protein	psRNATarget
BT088183.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:826   GUGCUCUCUCUCUUCUGUCA   845 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0047E05 mRNA, complete cds	NA	coding protein	psRNATarget
BT064694.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:895   GUGCUCUCUCUCUUCUGUCA   914 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0036O07 mRNA, complete cds	NA	coding protein	psRNATarget
AJ011618.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:595   GUGCUCUCUCUCUUCUGUCA   614 Target Full Sequence	1.0	Zea mays mRNA for SBP-domain protein 5, partial	NA	coding protein	psRNATarget
KJ727979.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1070   GUGCUCUCUCUCUUCUGUCA   1089 Target Full Sequence	1.0	Zea mays clone pUT6094 SBP transcription factor (SBP25) mRNA, partial cds	NA	coding protein	psRNATarget
XM_020543213.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:788   GUGCUCUCUCUCUUCUGUCA   807 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 2 (LOC103637478), mRNA	NA	coding protein	psRNATarget
XM_008678828.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:877   GUGCUCUCUCUCUUCUGUCA   896 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU975549.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:955   GUGCUCUCUCUCUUCUGUCA   974 Target Full Sequence	1.0	Zea mays clone 492287 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151973.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:955   GUGCUCUCUCUCUUCUGUCA   974 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), mRNA	NA	coding protein	psRNATarget
KU131572.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1000   GUGCUCUCUCUCUUCUGUCA   1019 Target Full Sequence	1.0	Zea mays cultivar B73 squamosa promoter binding-like protein (Tga1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678827.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:901   GUGCUCUCUCUCUUCUGUCA   920 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001318379.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:741   GUGCUCUCUCUCUUCUGUCA   760 Target Full Sequence	1.0	Zea mays Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279436), mRNA	NA	coding protein	psRNATarget
KU131571.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1014   GUGCUCUCUCUCUUCUGUCA   1033 Target Full Sequence	1.0	Zea mays cultivar B73 squamosa promoter binding-like protein (Not1) mRNA, complete cds	NA	coding protein	psRNATarget
KJ727943.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1124   GUGCUCUCUCUCUUCUGUCA   1143 Target Full Sequence	1.0	Zea mays clone pUT6039 SBP transcription factor (SBP20) mRNA, partial cds	NA	coding protein	psRNATarget
XM_008678826.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:935   GUGCUCUCUCUCUUCUGUCA   954 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY883560.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:993   GUGCUCUCUCUCUUCUGUCA   1012 Target Full Sequence	1.0	Zea mays cultivar inbred line W22 teosinte glume architecture 1 (tga1) mRNA, complete cds	NA	coding protein	psRNATarget
EU964656.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:763   GUGCUCUCUCUCUUCUGUCA   782 Target Full Sequence	1.0	Zea mays clone 280651 mRNA sequence	NA	coding protein	psRNATarget
EU972995.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:918   GUGCUCUCUCUCUUCUGUCA   937 Target Full Sequence	1.0	Zea mays clone 391427 squamosa promoter-binding-like protein 9 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138620.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:947   GUGCUCUCUCUCUUCUGUCA   966 Target Full Sequence	1.0	Zea mays Squamosa promoter-binding-like protein 2 (pco114323), mRNA	NA	coding protein	psRNATarget
BT035779.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:947   GUGCUCUCUCUCUUCUGUCA   966 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0083B18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678337.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:855   GUGCUCUCUCUCUUCUGUCA   874 Target Full Sequence	1.0	PREDICTED: Zea mays Squamosa promoter-binding-like protein 2 (pco114323), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT041777.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:929   GUGCUCUCUCUCUUCUGUCA   948 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds	NA	coding protein	psRNATarget
BT054238.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:889   GUGCUCUCUCUCUUCUGUCA   908 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143473.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:932   GUGCUCUCUCUCUUCUGUCA   951 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP23), mRNA	NA	coding protein	psRNATarget
BT037938.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:932   GUGCUCUCUCUCUUCUGUCA   951 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0203K20 mRNA, complete cds	NA	coding protein	psRNATarget
EU965000.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:960   GUGCUCUCUCUCUUCUGUCA   979 Target Full Sequence	1.0	Zea mays clone 283067 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645498.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1252   GUGCUCUCUCUCUUCUGUCA   1271 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001308478.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1055   GUGCUCUCUCUCUUCUGUCA   1074 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 17 (LOC542666), mRNA	NA	coding protein	psRNATarget
BT054334.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1055   GUGCUCUCUCUCUUCUGUCA   1074 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0338P09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301523.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1055   GUGCUCUCUCUCUUCUGUCA   1074 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), mRNA	NA	coding protein	psRNATarget
BT039521.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1228   GUGCUCUCUCUCUUCUGUCA   1247 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds	NA	coding protein	psRNATarget
BT084089.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1046   GUGCUCUCUCUCUUCUGUCA   1065 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073B10 mRNA, complete cds	NA	coding protein	psRNATarget
EU964361.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1203   GUGCUCUCUCUCUUCUGUCA   1222 Target Full Sequence	1.0	Zea mays clone 278288 mRNA sequence	NA	coding protein	psRNATarget
XM_008645221.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1252   GUGCUCUCUCUCUUCUGUCA   1271 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008645496.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1353   GUGCUCUCUCUCUUCUGUCA   1372 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU969824.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1353   GUGCUCUCUCUCUUCUGUCA   1372 Target Full Sequence	1.0	Zea mays clone 336108 squamosa promoter-binding-like protein 11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680176.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1248   GUGCUCUCUCUCUUCUGUCA   1267 Target Full Sequence	1.0	PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653214), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963637.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1402   GUGCUCUCUCUCUUCUGUCA   1421 Target Full Sequence	1.0	Zea mays clone 265056 squamosa promoter-binding-like protein 11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156062.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1402   GUGCUCUCUCUCUUCUGUCA   1421 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 11 (SBP25), mRNA	NA	coding protein	psRNATarget
XM_008645497.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1418   GUGCUCUCUCUCUUCUGUCA   1437 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553266.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1364   GUGCUCUCUCUCUUCUGUCA   1383 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645218.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1373   GUGCUCUCUCUCUUCUGUCA   1392 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973300.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1462   GUGCUCUCUCUCUUCUGUCA   1481 Target Full Sequence	1.0	Zea mays clone 396397 mRNA sequence	NA	coding protein	psRNATarget
XM_008679336.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1311   GUGCUCUCUCUCUUCUGUCA   1330 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679338.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1342   GUGCUCUCUCUCUUCUGUCA   1361 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679337.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1363   GUGCUCUCUCUCUUCUGUCA   1382 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681329.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1360   GUGCUCUCUCUCUUCUGUCA   1379 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681328.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1363   GUGCUCUCUCUCUUCUGUCA   1382 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681327.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1363   GUGCUCUCUCUCUUCUGUCA   1382 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT039945.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1526   GUGCUCUCUCUCUUCUGUCA   1545 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553268.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1561   GUGCUCUCUCUCUUCUGUCA   1580 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008645495.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1669   GUGCUCUCUCUCUUCUGUCA   1688 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665371.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1408   GUGCUCUCUCUCUUCUGUCA   1427 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665363.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1411   GUGCUCUCUCUCUUCUGUCA   1430 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957096.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1374   GUGCUCUCUCUCUUCUGUCA   1393 Target Full Sequence	1.0	Zea mays clone 1582615 mRNA sequence	NA	coding protein	psRNATarget
XM_008680174.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1586   GUGCUCUCUCUCUUCUGUCA   1605 Target Full Sequence	1.0	PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653213), mRNA	NA	coding protein	psRNATarget
BT053864.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1687   GUGCUCUCUCUCUUCUGUCA   1706 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152255.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1687   GUGCUCUCUCUCUUCUGUCA   1706 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), mRNA	NA	coding protein	psRNATarget
BT064560.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1576   GUGCUCUCUCUCUUCUGUCA   1595 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0183C18 mRNA, complete cds	NA	coding protein	psRNATarget
BT053875.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1562   GUGCUCUCUCUCUUCUGUCA   1581 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152261.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1562   GUGCUCUCUCUCUUCUGUCA   1581 Target Full Sequence	1.0	Zea mays Squamosa promoter-binding-like protein 6 (LOC100279240), mRNA	NA	coding protein	psRNATarget
NM_001175227.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1621   GUGCUCUCUCUCUUCUGUCA   1640 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), mRNA	NA	coding protein	psRNATarget
BT064536.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1621   GUGCUCUCUCUCUUCUGUCA   1640 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0178N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175355.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1613   GUGCUCUCUCUCUUCUGUCA   1632 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382631 (LOC100382631), mRNA	NA	coding protein	psRNATarget
BT064918.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1613   GUGCUCUCUCUCUUCUGUCA   1632 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0014E19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553267.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2002   GUGCUCUCUCUCUUCUGUCA   2021 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652792.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1971   GUGCUCUCUCUCUUCUGUCA   1990 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100217221), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669545.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:1845   GUGCUCUCUCUCUUCUGUCA   1864 Target Full Sequence	1.0	PREDICTED: Zea mays Squamosa promoter-binding-like protein 6 (LOC100279240), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676419.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   ||||||*||||||||||||| targets:2221   GUGCUCUCUCUCUUCUGUCA   2240 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 2 (LOC103650833), mRNA	NA	coding protein	psRNATarget
NM_001321489.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:593   AUGCUCUCUCUCUUCUGUCA   612 Target Full Sequence	1.0	Zea mays uncharacterized LOC107436005 (LOC107436005), mRNA	NA	coding protein	psRNATarget
AY103643.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:317   AUGCUCUCUCUCUUCUGUCA   336 Target Full Sequence	1.0	Zea mays PCO133434 mRNA sequence	NA	coding protein	psRNATarget
HQ858786.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:740   AUGCUCUCUCUCUUCUGUCA   759 Target Full Sequence	1.0	Zea mays clone UT1800 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
NM_001156764.2	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:724   AUGCUCUCUCUCUUCUGUCA   743 Target Full Sequence	1.0	Zea mays uncharacterized LOC100283866 (pco133434), mRNA	NA	coding protein	psRNATarget
EU966210.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:725   AUGCUCUCUCUCUUCUGUCA   744 Target Full Sequence	1.0	Zea mays clone 292600 SBP domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
BT087508.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:815   AUGCUCUCUCUCUUCUGUCA   834 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0098L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT033415.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:840   AUGCUCUCUCUCUUCUGUCA   859 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0223G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136780.1	ncRNA:20   CACGAGUGAGAGAAGACAGU   1   *|||||*||||||||||||| targets:840   AUGCUCUCUCUCUUCUGUCA   859 Target Full Sequence	1.0	Zea mays SBP transcription factor (SBP12), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).