| ncRNA ID | zma-miR2275c-5p |
| Species | Zea mays |
| Class | miRNA |
| Genome position | chr10:71458040-71458276 [+] |
| Reference genome | RefGen_v2 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 32 - AGGAUUAGAGGGACUUGAACC - 52 |
| Stem-loop(if miRNA) |
A UUGAU U AG - C AUUCAUAGCU C GUUAUGUCUGGAUCGAAGAGGGUUGGAAGGUCCUUUCUAGUUAAAAUUAAAUAG AG GAGAUG AUG GUCAUUUGA UGAGG AUUAGAGGGA UUGAACC UGUU G A || |||||| ||| ||||||||| ||||| |||||||||| ||||||| |||| | A UC CUCUAC UAC CGGUAAAUU ACUCU UAAUCUCCUU GACUUGG UGAG G A - ----- C CU A U ----GGAAAA - GUUACUCUCAAACAAACCAGUGUAGACCUAUCCUCCAAUUUCCCUAAGUUAGAG |
| Stem-loop sequence | AGAGAGAUGUUGAUAUGUGUCAUUUGAAGUGAGGAUUAGAGGGACUUGAACCAUUCAUAGCUUGUUCGGUUAUGUCUGGAUCGAAGAGGGUUGGAAGGUCCUUUCUAGUUAAAAUUAAAUAGAAAGAGAUUGAAUCCCUUUAACCUCCUAUCCAGAUGUGACCAAACAAACUCUCAUUGGGAGUAAAAGGGGUUCAGUUUCCUCUAAUAUCUCAUCUUAAAUGGCCCAUCAUCUCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_020543575.1 |
|
2.0 | PREDICTED: Zea mays uncharacterized LOC100275472 (LOC100275472), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| EZ052198.1 |
|
2.5 | TSA: Zea mays contig53319, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| EZ089372.1 |
|
3.0 | TSA: Zea mays contig25018, mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009). |