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BaseInfo

ncRNA ID	zma-miR171j-5p
Species	Zea mays
Class	miRNA
Genome position	chr10:59878128-59878256 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	23 - UAUUGACGCGGUUCAAUUCGA - 43
Stem-loop(if miRNA)	-AAU  CC     CUA    G       A            C      UC        G AGAGG  A     GG  GCGAG   GACG GGUAUUG CGCGGUUCAAUU GAGAGC  GAGCCCUA C     CC G     ||  |||||   |||| ||||||| |||||||||||| ||||||  |||||||| |     ||     CC  CGCUC   CUGC CUAUAAC GUGCCGAGUUAG CUCUCG  CUCGGGGU G     GG G CGCU  --     ACC    A       C            U      -U        G -----  G
Stem-loop sequence	AAUGGCCGCGAGCUAGACGGGGUAUUGACGCGGUUCAAUUCGAGAGCUCGAGCCCUAGCAGAGGCCAGGGGGGGUGGGGCUCUGCUCUCUGAUUGAGCCGUGCCAAUAUCACGUCCCACUCGCCCUCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163410.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   ||||||||||||||||||||| targets:78   UCGAAUUGAACCGCGUCAAUA   98 Target Full Sequence	0.0	Sequence 1074 from Patent EP2559767	NA	coding protein	psRNATarget
HI403244.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   ||||||||||||||||||||| targets:78   UCGAAUUGAACCGCGUCAAUA   98 Target Full Sequence	0.0	Sequence 1369 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235079.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   ||||||||||||||||||||| targets:78   UCGAAUUGAACCGCGUCAAUA   98 Target Full Sequence	0.0	Sequence 1074 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235374.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   ||||||||||||||||||||| targets:78   UCGAAUUGAACCGCGUCAAUA   98 Target Full Sequence	0.0	Sequence 1369 from Patent EP2985353	NA	coding protein	psRNATarget
JB163705.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   ||||||||||||||||||||| targets:78   UCGAAUUGAACCGCGUCAAUA   98 Target Full Sequence	0.0	Sequence 1369 from Patent EP2559767	NA	coding protein	psRNATarget
HI402949.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   ||||||||||||||||||||| targets:78   UCGAAUUGAACCGCGUCAAUA   98 Target Full Sequence	0.0	Sequence 1074 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239200.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   |=|=|||||=||||||||||| targets:73   UUGGAUUGAGCCGCGUCAAUA   93 Target Full Sequence	2.5	Sequence 5195 from Patent EP2985353	NA	coding protein	psRNATarget
HI407070.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   |=|=|||||=||||||||||| targets:73   UUGGAUUGAGCCGCGUCAAUA   93 Target Full Sequence	2.5	Sequence 5195 from Patent EP2074227	NA	coding protein	psRNATarget
JB167531.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   |=|=|||||=||||||||||| targets:73   UUGGAUUGAGCCGCGUCAAUA   93 Target Full Sequence	2.5	Sequence 5195 from Patent EP2559767	NA	coding protein	psRNATarget
EU950482.1	ncRNA:21   AGCUUAACUUGGCGCAGUUAU   1   |=|=|||||=||||||||||| targets:220   UUGGAUUGAGCCGCGUCAAUA   240 Target Full Sequence	2.5	Zea mays clone 494016 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).