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BaseInfo

ncRNA ID	zma-miR169l-3p
Species	Zea mays
Class	miRNA
Genome position	chr1:298277019-298277107 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	69 - GGCAAAUCAUCCCUGCUACC - 88
Stem-loop(if miRNA)	--     C                   UUCCU    UU  CA   CAA   GUAGC AGGGAUGAUUUGCCUGUGG     GUCG  GC  UGC   U   ||||| |||||||||||||||||||     ||||  ||  |||   CAUCG UCCCUACUAAACGGGCAUC     UAGC  UG  AUG   G GC     -                   -----    -U  UC   UCC
Stem-loop sequence	GUAGCCAGGGAUGAUUUGCCUGUGGUUCCUGUCGUUGCCAUGCCAAUGCCUGUACUGUUCGAUCUACGGGCAAAUCAUCCCUGCUACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235429.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   |||||||||||||||||||| targets:9   GGUAGCAGGGAUGAUUUGCC   28 Target Full Sequence	0.0	Sequence 1424 from Patent EP2985353	NA	coding protein	psRNATarget
JB163760.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   |||||||||||||||||||| targets:9   GGUAGCAGGGAUGAUUUGCC   28 Target Full Sequence	0.0	Sequence 1424 from Patent EP2559767	NA	coding protein	psRNATarget
HI403299.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   |||||||||||||||||||| targets:9   GGUAGCAGGGAUGAUUUGCC   28 Target Full Sequence	0.0	Sequence 1424 from Patent EP2074227	NA	coding protein	psRNATarget
HI403491.1	ncRNA:20   CCAUCG-UCCCUACUAAACGG   1   ||||||-|||||||||||||| targets:9   GGUAGCCAGGGAUGAUUUGCC   29 Target Full Sequence	2.0	Sequence 1616 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235621.1	ncRNA:20   CCAUCG-UCCCUACUAAACGG   1   ||||||-|||||||||||||| targets:9   GGUAGCCAGGGAUGAUUUGCC   29 Target Full Sequence	2.0	Sequence 1616 from Patent EP2985353	NA	coding protein	psRNATarget
JB163952.1	ncRNA:20   CCAUCG-UCCCUACUAAACGG   1   ||||||-|||||||||||||| targets:9   GGUAGCCAGGGAUGAUUUGCC   29 Target Full Sequence	2.0	Sequence 1616 from Patent EP2559767	NA	coding protein	psRNATarget
BT036444.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   *||=|=|||||||||||||| targets:339   CGUGGUAGGGAUGAUUUGCC   358 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0114I03 mRNA, complete cds	NA	coding protein	psRNATarget
BT085166.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   *||=|=|||||||||||||| targets:1154   CGUGGUAGGGAUGAUUUGCC   1173 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0312F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139088.2	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   *||=|=|||||||||||||| targets:1636   CGUGGUAGGGAUGAUUUGCC   1655 Target Full Sequence	2.0	Zea mays F-box family member (LOC100194025), mRNA	NA	coding protein	psRNATarget
EU970769.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   *||=|=|||||||||||||| targets:1640   CGUGGUAGGGAUGAUUUGCC   1659 Target Full Sequence	2.0	Zea mays clone 350429 mRNA sequence	NA	coding protein	psRNATarget
NM_001138204.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   *||*|||||||||=|||||| targets:482   AGUUGCAGGGAUGGUUUGCC   501 Target Full Sequence	2.5	Zea mays Mitochondrial import inner membrane translocase subunit TIM44-2 (cl31945_1), mRNA	NA	coding protein	psRNATarget
BT035188.1	ncRNA:20   CCAUCGUCCCUACUAAACGG   1   *||*|||||||||=|||||| targets:482   AGUUGCAGGGAUGGUUUGCC   501 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044D11 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).