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BaseInfo

ncRNA ID	zma-miR169l-5p
Species	Zea mays
Class	miRNA
Genome position	chr1:298277019-298277107 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UAGCCAGGGAUGAUUUGCCUG - 22
Stem-loop(if miRNA)	--     C                   UUCCU    UU  CA   CAA   GUAGC AGGGAUGAUUUGCCUGUGG     GUCG  GC  UGC   U   ||||| |||||||||||||||||||     ||||  ||  |||   CAUCG UCCCUACUAAACGGGCAUC     UAGC  UG  AUG   G GC     -                   -----    -U  UC   UCC
Stem-loop sequence	GUAGCCAGGGAUGAUUUGCCUGUGGUUCCUGUCGUUGCCAUGCCAAUGCCUGUACUGUUCGAUCUACGGGCAAAUCAUCCCUGCUACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163760.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   ||||||||||||||||||||| targets:75   CAGGCAAAUCAUCCCUGGCUA   95 Target Full Sequence	0.0	Sequence 1424 from Patent EP2559767	NA	coding protein	psRNATarget
HI403299.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   ||||||||||||||||||||| targets:75   CAGGCAAAUCAUCCCUGGCUA   95 Target Full Sequence	0.0	Sequence 1424 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235429.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   ||||||||||||||||||||| targets:75   CAGGCAAAUCAUCCCUGGCUA   95 Target Full Sequence	0.0	Sequence 1424 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   |||||||=||||||=|||||| targets:545   CAGGCAAGUCAUCCUUGGCUA   565 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
BT054579.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   |||||||=||||||=|||||| targets:545   CAGGCAAGUCAUCCUUGGCUA   565 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
BT062831.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   =||||||=||||||=|||||| targets:304   UAGGCAAGUCAUCCUUGGCUA   324 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds	NA	coding protein	psRNATarget
BT068645.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   =||||||=||||||=|||||| targets:932   UAGGCAAGUCAUCCUUGGCUA   952 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176546.1	ncRNA:21   GUCCGUUUAGUAGGGACCGAU   1   =||||||=||||||=|||||| targets:932   UAGGCAAGUCAUCCUUGGCUA   952 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).